Axyl001035.2
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387370.1:4462016-4474094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0035 0.26 12.6 4.4 1 23 252 275 252 275 0.93 2 23 1.5 1.1e+02 4.3 0.0 3 23 302 323 300 323 0.94 3 23 0.017 1.3 10.4 0.6 1 23 348 370 348 370 0.98 4 23 0.79 58 5.2 1.1 1 23 374 396 374 396 0.78 5 23 3.8 2.8e+02 3.0 2.0 1 12 400 411 400 423 0.83 6 23 5.5 4e+02 2.6 8.7 2 23 430 452 429 452 0.94 7 23 0.0035 0.25 12.6 0.9 1 23 459 482 459 482 0.95 8 23 0.064 4.7 8.6 0.9 1 23 522 544 522 544 0.96 9 23 0.16 12 7.4 0.0 2 23 573 595 572 595 0.93 10 23 2.1 1.5e+02 3.9 0.1 2 23 616 638 615 638 0.91 11 23 0.001 0.075 14.3 2.1 2 23 644 666 643 666 0.95 12 23 0.0078 0.57 11.5 1.2 1 23 671 694 671 694 0.96 13 23 0.3 22 6.5 0.1 2 23 697 719 696 719 0.95 14 23 0.032 2.3 9.6 1.4 2 22 726 746 725 746 0.93 15 23 0.0046 0.33 12.2 0.5 1 23 806 829 806 829 0.92 16 23 0.47 35 5.9 0.1 3 23 858 879 856 879 0.92 17 23 0.056 4.1 8.8 0.5 3 23 903 925 901 925 0.95 18 23 0.0045 0.33 12.3 0.7 3 20 932 949 930 953 0.90 19 23 0.025 1.8 10.0 0.4 1 23 958 981 958 981 0.97 20 23 0.00025 0.019 16.2 0.4 2 23 987 1009 987 1009 0.94 21 23 7e-05 0.0051 18.0 4.7 1 23 1013 1036 1013 1036 0.97 22 23 0.0003 0.022 16.0 0.6 2 23 1043 1064 1042 1064 0.96 23 23 0.0066 0.48 11.7 3.2 1 23 1070 1092 1070 1092 0.97
Sequence Information
- Coding Sequence
- ATGGACTTTGACGAGATTGTTGTAAAAGAAAGCCCCGGCTTATGCCGGTGCTGTCTTTCCGAAGGTTGTTATAAAGACTTGGGTTCGGAGTATAGTTGGATGAGTGAGACCGAAATTTATGCTGATATGTTACTGGAATGCTTCGATATCAGCATATCGCAGCACCCCACAGGCCCGAATGGCTCGAACCGCCTCATCTGCGAGGTGTGCATCACGCGGCTGCGCGACGCCTGCAACTTTAAGAAGCAGGTGTTGGAGTCCGAGAAGCGCTTTGTGGATATGGTGGGGCGGGGGGAGTTCCGGCCCAAAGTGCTGCTGTACCAGACGCAGATGAAAACTGAGCTGAACATGGACATAGAGGAGGACACCGGAGGCGACGACCCGGAGGTGGAATATCTCGAGGACGACCCAGACTATATTGATGAGGATCTCCTCAAAAACGAAGACTACGGAGAACCGTCAGTGTCTGAGGACATAACAGTCTCCGCACTGGCTGTGAAAGGCAAGCGGGGTCGCCCCAAGAAGTCCTCCACTGCAGTCAAGCCAGAGAAGAAGGCTAAAGTGCCGAAGCTGGAGGAGAAGTCCACAAAGTCCAAAGCGGTTGCTAAAGGTAAGAAATGGCCGGAGGCGTCCGACACATCGACAAATAAATCCCATTTGTCAGCCACTAAAAGAAACCGGCTCATGAAGGCAAACGCCATCATTGTCCTAGAATCCTCCACGGTCGTGCCTTTCAAGTGGCAGAGGCAGAATTACCTCTGTTTCTTCTGTCACAAGATCTTTAAGAGCACAGAATCCCTCAAAAAACATACCAGGGACGACCACCAGAAATCAAACATCAAAGCCGCCGTTTCTTACCTAAGAAGAGACGAGAAAGTTAAAGTCGACGTCTCTATAATAGACTGCCGTATATGCGATGCTAAATTAGACGACATAAACTCACTTATAACTCATCTCAGTTCAGCACATGACAAACAATTCACCGAACAATACGGATGTTTCGGAATCATACCTTACAAACTCGACGGCGATAGCAATGCGTTCCAATGCGCAGTTTGCAAAGAAGAATTCCAATACTTCATCAAACTAAACGAACACATGAATCTCCATTACGGGAATTACATATGCGATGTTTGCGGAAAAGGTTTCCTAAGCCAAAACCGCCTCAGATGTCACGTTTTGAATCACGGCTCTGGTTTCCGGTGCAGCCTCTGCCCGGAGACCTTCGATTCGCTCACCATCAAACACAACCATGAGTGCAAGGTACACAACAAAGCGAAACTTTGCAAGTGCTTCTATTGCGACGAAACATTCCCCAATTACATGCGACGGAAAAGGCATCACCACACCGTCCATAACCTGGAGATACCTGGGTTTGAATGTCCAATATGTCACAAGGCGTTTGAGATAGAAAGCAAGATGCTAGCTCATCACAAAGAAGTGCACGTACATGTTAAACCGCGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGCAGACGGAGAAACCTCCAAATACTGTTCAACAGCACCACGATAATACCTTTCAAATGGCGCGGCAAATACCTCTGCTTCTATTGCAGCAAAGACATTGCCGAGTACTCCGCTCTCCGCAAACATACCAAATCCCACGGCGATTGTTCCACGCGCGATCATTCCTTAAAAGTACTAAAAGGCGGTCAGAACATGGAGATTAAAATCGACGTGTCCGATATTAGTTGCGAAATCTGTAGCGAACCATTCCCTTCCTTCGACGATATTATTACACATCTGTTTATCAAACATAAGTTAGAATACGACAGAGGAGTAGACATGGCTATAGAGGAGTACAGGCTAGTTGATCTCAGTTGTCTAGCGTGCGAGGAAAAATTCGCGTATTTCGGCTACTTAGTGTCCCACGTCAACAATAGTCATCCGAAAAACTGCCTCATTTGTGACAAGTGCGAGCAAAAGTTCAATAAGAAGCGAGACTTGTTCTCTCACATGAAAAACTATCACAGGGAAGGTGGTTACCAGTGCGAATCTTGTCCGCAGTCCTTTAGTTCTTTAAATATTCTCCGTAAACACAGAAACAATCGACACTTGACTAGATGCAGCATTTGTCAGTTAAAACTGCCTTCTGCCGCTTTAAAACAAAAGCATATGGAGGTAGAACATCCAGATGACGGGTCTCTACAATGCGACAATTGCTTTAAAGAATTCCATACGAAACAGGGGCTCCGAATGCACGCAAGAAAGTGTAAAGGTGATGATCTGTTTGAAATAGAAATAAGAAAAAAAGATTACGATCCCATGGATCTCGATCAGAATTACGAAGACCCCGTGAAGAGACCCAGCGTCAAACAGATAAGAGAAAATATAGTGATAGTTATTAACATGTCGACAGCTATACCTTTTAACTTCTATAAGAACAAATTTAACTGCTTTTATTGCTCCAAAGACTTTCCCGATTCGGATCAAATGCGTGAACATACGGTAATCGAACATCCTATATGCGACGTTAAACAGAAATGTATAAGGAAATGCAGGGAATCAGTGGCATGCGTTAAAGTTGACATCTCTTCTTTAGCGTGCAAATTATGTTTCGAGTCTGTATCAGATTTCGATACTTTGTTAGATCATTTAATTTTAAAACATGACGCTAATTATGATAAATCAATAACAACTTGCTTACAACCTTATAGACTCATCAAAGACCACATGGCATGTCCGCACTGTCCTAACGAAGTATTTAGATTCTTCGGAACTTTATTAAAACACATGAACAACATACACACTAATAATAACATAATTTGCGTCTTCTGCGGCCAGACTTTTAGGCGGGATCAAAATCTGCGCGTTCATATCTGGAGGCATCACAGGGATGGTAGATTTAAATGTAACATTTGCGGTGCGGATTGTAATATACCGTCTAGACTGTATATGCATATGGCTAAAGCCCACGGCGTTAAGGCGGCTAAGTGCCCTAAATGTCCGGAGAGCTTCTCAACTCAATATTTAAGACAGAAACATCTCATTGAAGTCCACAATTCCGGCCACAAGTGCTCCTACTGTGGAAAACTGTTCACTAGAAATTCTTTTATGAGAGACCATATTCGACGGACACATTTGAAGGAGAAAAACGTCGAATGCTCCATTTGTAATATGAAGTTTTTCAACAACATTCTGCTTAGACGCCACATGGTCAAACATAGCGGCGAGAAGAACTTTCATTGCGATATCTGTGGGGAAAGATTCTTCTGGAGGAAAAGTCTCCGAACTCACATGTCTAGGCACAATAAACATATTAACCCTATACATATTTAG
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMSETEIYADMLLECFDISISQHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKRFVDMVGRGEFRPKVLLYQTQMKTELNMDIEEDTGGDDPEVEYLEDDPDYIDEDLLKNEDYGEPSVSEDITVSALAVKGKRGRPKKSSTAVKPEKKAKVPKLEEKSTKSKAVAKGKKWPEASDTSTNKSHLSATKRNRLMKANAIIVLESSTVVPFKWQRQNYLCFFCHKIFKSTESLKKHTRDDHQKSNIKAAVSYLRRDEKVKVDVSIIDCRICDAKLDDINSLITHLSSAHDKQFTEQYGCFGIIPYKLDGDSNAFQCAVCKEEFQYFIKLNEHMNLHYGNYICDVCGKGFLSQNRLRCHVLNHGSGFRCSLCPETFDSLTIKHNHECKVHNKAKLCKCFYCDETFPNYMRRKRHHHTVHNLEIPGFECPICHKAFEIESKMLAHHKEVHVHVKPRKYKGCESSSMRRRRNLQILFNSTTIIPFKWRGKYLCFYCSKDIAEYSALRKHTKSHGDCSTRDHSLKVLKGGQNMEIKIDVSDISCEICSEPFPSFDDIITHLFIKHKLEYDRGVDMAIEEYRLVDLSCLACEEKFAYFGYLVSHVNNSHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCESCPQSFSSLNILRKHRNNRHLTRCSICQLKLPSAALKQKHMEVEHPDDGSLQCDNCFKEFHTKQGLRMHARKCKGDDLFEIEIRKKDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDQMREHTVIEHPICDVKQKCIRKCRESVACVKVDISSLACKLCFESVSDFDTLLDHLILKHDANYDKSITTCLQPYRLIKDHMACPHCPNEVFRFFGTLLKHMNNIHTNNNIICVFCGQTFRRDQNLRVHIWRHHRDGRFKCNICGADCNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEVHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMSRHNKHINPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01136017;
- 90% Identity
- iTF_00155558;
- 80% Identity
- -