Axyl014227.2
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387347.1:17313917-17325319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 0.92 10.9 0.6 3 23 699 720 698 720 0.96 2 23 0.66 48 5.5 0.2 1 21 1103 1123 1103 1124 0.96 3 23 9.1 6.6e+02 1.9 0.3 1 22 1166 1187 1166 1189 0.82 4 23 0.0016 0.11 13.7 0.7 3 21 1200 1218 1198 1219 0.95 5 23 0.89 65 5.1 0.3 3 23 1228 1249 1226 1249 0.91 6 23 0.0099 0.72 11.2 0.2 3 23 1269 1290 1267 1290 0.96 7 23 0.016 1.1 10.6 2.4 1 23 1296 1319 1296 1319 0.92 8 23 0.17 12 7.3 0.0 1 23 1345 1368 1345 1368 0.90 9 23 0.026 1.9 9.9 3.4 1 23 1373 1395 1373 1395 0.97 10 23 0.026 1.9 9.9 0.3 1 23 1401 1424 1401 1424 0.95 11 23 0.0032 0.23 12.8 1.3 1 23 1437 1459 1437 1459 0.97 12 23 0.00024 0.018 16.3 1.8 1 23 1508 1531 1508 1531 0.97 13 23 0.0092 0.67 11.3 1.8 1 23 1607 1630 1607 1630 0.96 14 23 0.0015 0.11 13.8 2.1 2 23 1655 1677 1654 1677 0.95 15 23 0.12 8.6 7.8 0.1 2 23 1683 1705 1682 1705 0.93 16 23 0.0089 0.65 11.3 0.3 1 21 1746 1766 1746 1767 0.95 17 23 0.0017 0.12 13.6 0.6 1 23 1777 1799 1777 1799 0.93 18 23 0.00015 0.011 16.9 0.3 2 23 1894 1916 1894 1916 0.93 19 23 4.5e-07 3.3e-05 24.9 1.4 3 23 1923 1943 1922 1943 0.98 20 23 0.025 1.8 9.9 0.3 3 23 1966 1986 1964 1987 0.95 21 23 0.13 9.3 7.7 0.0 1 23 2008 2030 2008 2030 0.98 22 23 0.037 2.7 9.4 0.6 1 23 2036 2059 2036 2059 0.95 23 23 0.00069 0.05 14.8 0.5 1 23 2067 2090 2067 2090 0.95
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCACGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCATTCAGATAAACGAGAATGACGACCTGCCTACTAATGCCTGCAGAAAATGCGTGGACAATGTCAATAACTGGCATATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTTTGATTAAAAAAGATGGCAGCCAACTAGAAGAGCTGAATATAAAAAGTGAACCACTGTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGGCATATCGAGAGGAGGCTGCTGGTACCAGCAAAGTGCAGCCCGAAGGCCCTCCTATCTTGGCTTCGCTGGGACTCACGCCGCGGAGTGATAAGAATTATGTTGACCCTAGGATGGATTGGCACCGAGTCCATGCTATTTTGGACATGGTTCAAGATGATGATGTTATCAATTCCCTGCAGTCTGCTGAAGAATGTGACATACTACTGCAATCCGATCATGATTCAGATTCTGACTTAGAACTGGAATGTGACCTTGATGATGCATATATTGATTGTAAAAATGGATACAAGTCGAGAGACTTTAAAATAATTTCAAAGAGACCATTGATATCTGGTGCTGAAAATTACCCTAAGGTTAGGGATGCTATGACATTAAGGAAGAGATGCAGTCGAGAGTACAAACCTTGCCCGCAACCAAAACATGCTTGGGAGTTGATTTTCACAAATGACCTACTTGAACTGATTGTCACGGCTACTAATGAAAACATCACCAAAAATGGCAGAAGCTTTTCCTGTGGCACCAATATATCTGAAATAAAAACACTTATCGGCATATTATATTTTCACGGCATAATGAGGCCAACTCATCAGAAATTGAAAGACTTATGGCATGTCCAATATGGGTTAACTTGCATTAAAAATGCTATGAAGTTTGAAAGAGTTAAGTTTCTTCTTGAGAACTTGTATTTTTATAATGATGATGATGAAAGTCTCATGCAGTTTGACATTATGAAGCAAATGCGTACAGTGTTGGAGATATTTACTTTGAATTGCCGATCAGCGTATCACATTGAAGATATTGCAGTTATTGATGAGATACTTGTACCTGTTTTTGGGCCAGCTCCATTCAGATTTGATATAGAGAAAAAGGCACTTAAATCTGGCATTAAAATGGTACTACTAGTTGATCCTAAAAATTTTTATATAAGCAATTTGGATATCATTACTGATTCATATTTTAGAGCGGATGAGATAGTTAATAAATTAGTCCAACATTTGGCTGGAACTGGCAGAGTTGTAGTCATGGACAACTGGTTTTCGTCATACACCTTGATTGAGAAGTTGAAGCATGAATACAAACTCTTTTGTTTGGCGGCTTTGAAACAAAAAGATGAGATTATTCCCCCTTTCTTCCTGTCACAAGATAGGATGGCAAAACCAGTCCTGGTGGGATATTTAGTTGATGGTTACACATTAACTTCTCAGATGATTTCTAAAACAAAGTCAGTCAATGTACTGACCAACGATCCGAAGTTTAACAAAAAAGGTCTGCTCAAGAAATCATCTGCGGCAACAGAATATAAGCGGAACCAATCTGCAGTTGAAGTTGTAGACGTGCTGATGCATTATTATACGACCATGCAGTACACTAACAGTTGGATGATGTCATTGTTCTTTTCATTACTTAACATAGCCTCTGTCAATGCTCAAGTGATCTGGTCAACTTACAACAGGCAGGATGTCGTGAAGCGCAGATTGTTTATACAAGAGCTGGCTCTAAGCCTCATGAAGACAGATGCTTCATTCCCAATGTCTCCAATAAACCAAGCTTTATTGAAGTGTAGTTCTAAGGGCGTCGAAAGCGAAAAAGACGAGGAAGAAGACGAAGATGACGAAATGATTGAGCCCGCCCAGCAGTACAACAAAGTGGCGAGCATGCCCGAGGTGTCCATCACAGTGATGCGGCCGACGGGCGAGACGCTCCACGCGCGGCAGGGCATCCAGCAGCTAGCCAGCAAGGACTGCCTGGTCTGCGGCCGCGCCTACCGCTACTCGCACAACGCGCGCCGCCACGAACTCACCGCACACGGCTTCGACAGGTACACCAACAAGATCAACACCAAAAAAACAAAAACCCACATGCAACCGAAACTCAGACTCAACCCGTTCAATCCCAAAGCTCGGCTCATGCCCAACCCCATTAGCCACAAACTGCAATTCCAAAAACCGATGCCAAATCGCATTATGCCATCTAGAATTGTCGCCCCACCGAAACCGATACCGATCAAAACCTCAAAACCCGTACACAATAATCTACCTTATCCTTTGAGAATAAAAGCACTTAAGGATTTGCAAATTAAGAAAAAAGAACCGCAAATTTTGAAAACTTTGCTCACGTCTAAACCCGAATATTTGGTTTCCGAACCTGCCATTATTAATTCCGGCCCGGAAAGTCCAGAAACTTTAATATCAGAACCAGAGATTGCCTCATTCCAAGTTGAAACTATCTTGTCCGAACCTGGCTTCGATCAAAACAACGAAGAAGAAGAGGAGGTTGATGAATCCCAAAATCAAAATCAACATTACGATACTGTTGATATGGAATCTGATCATGAAATTGAGATCGCACGTCAAAAAGAAAATGATGGTGAAAATGATGGTGAAAACCAGATTGAACACGATGAAGATGAAATGCAACATGACAATGAAAACATGGACAATACGGAAGGTGAAATGAGTGATAATGAGAATGGACATCAAGAGGAGGATGAAGAACAAGGTGAAAGTCAGGGGGATATGATCATAGAGGAGCATAATGAAGCTCAAGGTGAAGACGGTGAAGGAGAAAATGACGAAGACAATGGAGATAGAGACGAAGATCAGGATGGCAATGAAGAAAATGAAAACGATGAAGATGAAGATCTTCCTCCAGTGTTAGCACCTGTTGTTGAAATTAACGAAGACCTGCAAACTAACTCTTATAACAGTGAGCAAAATGAAGAAGAGGAGGAAGAACTCGACGAATCTGCTGCTAATGACAACATTGACGAAGATGTCAAGGAGCTAGATCCTGACAAGGTTTATGTCACGAAAACTCAAAGAGATTTTATTCAAAAGTATAGAGACATTATTCAGCAGATTAATACCAAGCGATGTCTCTGCTGCGATAGGGATCATCCTCGTAGAAAAGCTGTCATCCAACATCTTCAGAAAAATGGACACAAAGTACCAAAACACACATGTTACAATTGCGTTGTAACTTTTGGTCACATTGGCGCATTACTTAGCCACATGCGTGCCAATGTTTGCACAGATCTATGGAAGATAATTTACAACGAAAATGGAATAACTGACGACTTGGTGATGGAAGATGAGCCCAAAGATAATAAAGTGCAATATAAGGATATTTTCAATGCCAGATCGTATGCGTGTAAACTGTGTCCAGCTAAGTTCCAATTGAAACAGTTTATTATGAAACACGTTCTGGATGTTCACGAAGATGGTCAATCCAGGGTGCCTATGGCTTGCGTACACTGCGGGTCGAGGTTCAAAGACAAATCCTTGTGGAAGAGACACATCCGGAATGGAGAATGTACAGTTTACATTGCATGCGATCTTTGCACTGAAAAATTCGTAAATATGCAAGATTTTAACGACCATGCTCTACATGTGCATGCTGGCAGTTTCGATCCAGATAATCAAAACAAGTGCATCGACGGCCGTCCCACAGATTGTCCTCTGTGCGGTAAAAAGAATAGTAACTACCCGAATTTGGTGAAACATATAAAGTCAGCGCATAATGAAGACAAGCCTCATTACTGTCAACATTGCGATGCCAAATTTGAGCAAACTCCTGATTTGAATAAGCACATTTACGCTCAGCATTCAGATAAAGTAATGGGTGCACAACCAATGGAACCAGACATGTCAATCATCAAGGAAGAAGCTGAGGAGTATCATTATTCCTGCACGGAATGCAACGCTATATTCGAAACCGTCGACGCCTGGACGGACCATCAGGTAGCTGAACACAATCAAGTCGCCCATCATTGCGACCAGTGTGAAAAGAAGTTCCTGCGGCCATCAGAACTAGCAGAACACAAAAACACTCATTTGAGAGTTAAATTCTATCCTTGTAGTGTTTGCTCTAATTCATACAGTACTCCACAAAAGTTATCTGAGCACGTGCAACAGTCCCATCCGGGTGCCTCGGCTTACGCCGCAGCCGAGACTGAATTCTTTTGCGACATCTGCATCAGGTCATTCAAAAGCCGTCAAGCTTACTCTAACCACATGCGCATCCACGCCAAAGTGCCGACCACTAACAGGAAACCTGGCGAGCCTAAAGGTTTCGCTCCACAAATCATTGGCAAGCCTATCCGCCAGTTCCCTATGATCCAACCGGGCTTGGTCTCATTCAAGCCCAATTGCAATGTTCCTAATGCTCCATATTCGTGTGACATTTGTGGAAAAGGTTTCATGCATAAGAAGAATATATGGAAACATAAGAAGGTGTTGCATGCCGACCTCCTGAATGAACGCAATGACAGTGAAGACAACACCATGCAGGCATCTACTGAAGAAGATGAATATAATGTGGACGAAAACGGCACTGCATTGTCAACACCACAGTTCAACAGTTTTAATTTCTCGAACTTTGCTAATAATGTGCAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAATCGACGCCAACAAATGACGCCTTGCCATTCTCCTGCGAACTTTGTTTCAAACGGTTCCCGCTTAGAACGAGTTTGTGGAAACACAAACGCGCCAAACACGGTATCATTAACGCGAGCGCAACCGGCAATCCCGAGAATCAAGCACAGCCATCTTCGGAAGGTGGTAGGTCTAGTTGCACAATTTGCAAGATTACATTCTCGGATAAAAAGTCGTACTATCGCCATAGGAAAAACGTGCACAAATCCACCGCACAAATGTGTAAGATTTGCGGTAAACCATTAAACTCTACTTTGGAATTGTACGAGCACTTGAAGGCTGCTCATGCCCGGGAACTACTGGGATACAATGCTAATCAAGGCACAAGTAAAACACAAGAGGACGTGAAAATAGAATATGAACCCGAACCTGAAATCAATGATCCGAGTGCTGAATATCAAGCGCGTTACCCGTGTGATACTTGTGGTAAGCAATTCGTAGGACTTCTGTCGTTGCAGAACCATCAATGTATAAACCAAACTACTTCAGAGCCTCAAACTTTCGACTGTGAAATATGCCATAAGAGCTATACTTCGATAGCAGCGTTGAAGAGCCATCGCGGCTGGCATTTGCGCTCTCCTGACGGTAAGGCTGCTGCGAACAACAGCGGCTTATGGATGCCGCAGCACAAAGTAACCAGCAAAGTCAGTAAGCATGAAGTCGTAGATGCCTCACAACTTGCGAGAGTCACCCACTCCACCCCCACAGCAACCACTACTACAACTTCTAACAAACGGCGGCTACCACCAGAAGTAGAGGTAACCGTCGTCAACCCTAACAAGAAAATGAGATCAGACGATTCTATGGAACTCGAACAGCAGAATAGTTTAACCGGAACTCTAGAAGATCGTTATTGCACTATCTGCGACAAAGAATTCACCAAACGGGCGGCTTACCAGCGCCATATGGATGAAGTTCACCAGCCGAATTCTGTGTTTTGCCCGGTATGCGATAAGAGCTTCACTCGCAAATCGACTCTGCTCGTCCATATGAAAAAGCATTACGGTGGCGACGGGGAAGGAAGTTCGAGCGCGATGGGTCAATCGATTGAGGAAGATATGTTCGGGTGCGACCAGTGCGGGGCTCAGTACAACAACGAGGCTGCGTTACGAGCGCATCGCGCGCGGCACCACGCGGAGGACTCTAACGAGTCCGAAGACGATGGCAACGTACCAGTAGCCCAGCCCGGAGAGTTTACCTGCGGCCAGTGCGGGGACGGCGTCGCCACGCCGCGCGACCTTATCGCCCACCGATCCATGCACGCAACACCGACCAAATTCTTCTGCAACATTTGCAAAGTTTACTTCGCACGCGCTCTGGATCTTTCATCTCACACTCGGGCGAGGCATTCCGACAACGAAAAAGTATTCTTCCCTTGTGCCATGTGTGACCGCTTCTACATGAACAAGAAAAGTTTACAACGACACATTGATGTGTCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPHVLASKIKDCVAIQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEELNIKSEPLSDEAYDDGVVIDGAYREEAAGTSKVQPEGPPILASLGLTPRSDKNYVDPRMDWHRVHAILDMVQDDDVINSLQSAEECDILLQSDHDSDSDLELECDLDDAYIDCKNGYKSRDFKIISKRPLISGAENYPKVRDAMTLRKRCSREYKPCPQPKHAWELIFTNDLLELIVTATNENITKNGRSFSCGTNISEIKTLIGILYFHGIMRPTHQKLKDLWHVQYGLTCIKNAMKFERVKFLLENLYFYNDDDESLMQFDIMKQMRTVLEIFTLNCRSAYHIEDIAVIDEILVPVFGPAPFRFDIEKKALKSGIKMVLLVDPKNFYISNLDIITDSYFRADEIVNKLVQHLAGTGRVVVMDNWFSSYTLIEKLKHEYKLFCLAALKQKDEIIPPFFLSQDRMAKPVLVGYLVDGYTLTSQMISKTKSVNVLTNDPKFNKKGLLKKSSAATEYKRNQSAVEVVDVLMHYYTTMQYTNSWMMSLFFSLLNIASVNAQVIWSTYNRQDVVKRRLFIQELALSLMKTDASFPMSPINQALLKCSSKGVESEKDEEEDEDDEMIEPAQQYNKVASMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHGFDRYTNKINTKKTKTHMQPKLRLNPFNPKARLMPNPISHKLQFQKPMPNRIMPSRIVAPPKPIPIKTSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEYLVSEPAIINSGPESPETLISEPEIASFQVETILSEPGFDQNNEEEEEVDESQNQNQHYDTVDMESDHEIEIARQKENDGENDGENQIEHDEDEMQHDNENMDNTEGEMSDNENGHQEEDEEQGESQGDMIIEEHNEAQGEDGEGENDEDNGDRDEDQDGNEENENDEDEDLPPVLAPVVEINEDLQTNSYNSEQNEEEEEELDESAANDNIDEDVKELDPDKVYVTKTQRDFIQKYRDIIQQINTKRCLCCDRDHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVMEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCTEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDKPHYCQHCDAKFEQTPDLNKHIYAQHSDKVMGAQPMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAYAAAETEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSNFANNVQQQQQQQQQQQQQQQQSTPTNDALPFSCELCFKRFPLRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKTQEDVKIEYEPEPEINDPSAEYQARYPCDTCGKQFVGLLSLQNHQCINQTTSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVTHSTPTATTTTTSNKRRLPPEVEVTVVNPNKKMRSDDSMELEQQNSLTGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAMGQSIEEDMFGCDQCGAQYNNEAALRAHRARHHAEDSNESEDDGNVPVAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIDVSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135995;
- 90% Identity
- -
- 80% Identity
- -