Axyl011252.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387373.1:2962061-2968597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0001 0.0076 17.4 2.5 1 23 414 436 414 436 0.98 2 18 1.8e-05 0.0013 19.8 2.7 1 23 456 478 456 478 0.98 3 18 6.8e-06 0.0005 21.1 1.5 1 23 501 523 501 523 0.99 4 18 0.27 19 6.7 0.0 2 21 529 548 528 549 0.92 5 18 6 4.4e+02 2.4 0.1 1 20 620 639 620 641 0.87 6 18 0.00018 0.013 16.7 1.2 2 23 648 669 647 669 0.96 7 18 0.00031 0.023 15.9 2.2 1 23 675 698 675 698 0.98 8 18 1.2 85 4.7 7.4 1 23 704 726 704 726 0.95 9 18 0.32 23 6.5 3.4 1 23 735 757 735 757 0.89 10 18 0.00052 0.038 15.2 0.5 1 23 763 785 763 785 0.98 11 18 0.0003 0.022 16.0 0.5 1 23 791 813 791 813 0.98 12 18 6.9e-05 0.005 18.0 4.5 1 23 819 841 819 841 0.98 13 18 1.4e-05 0.001 20.2 4.9 1 23 847 869 847 869 0.98 14 18 0.00018 0.013 16.6 1.9 1 23 875 897 875 897 0.98 15 18 3.7e-06 0.00027 22.0 1.1 1 23 903 925 903 925 0.98 16 18 5e-07 3.7e-05 24.7 3.6 1 23 931 953 931 953 0.99 17 18 0.00011 0.0079 17.4 1.0 1 23 960 982 960 982 0.94 18 18 0.00033 0.024 15.8 0.1 1 23 988 1010 988 1010 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGGTGAAGGAGGAAGCGGCTTGGGAGGAAGAGTATGTGGAGACACTCTGGGCAGCCCTGTACGCCGGCCGCGAAGCAAGATCGCAGGCTCCAGACATCGTAACACCAGTTGGAAGACAAAATGCAGTTAACACAAATGTTCCGCAAACCAAGACGGAGGCAGTACGAGACCCTGATGATGTTGCTGCCACCCACTCAATCCTTAAAGACGCCAGTACAAATATAATACCCAAGACTGAACCAGTATGGACCCCTGAAGACACTTCCACCAACCTTGAAGATGCCACTATTAGTAATACGCTCAGAACACTAATACCAGATGGTATTGCCAATTTCTCTACCAACCAGCCTGACCTTGAAGACTCCAGTAGCAATAACTCATGTGACGTAGATCTAATACAGATCCCTGAGGATGTTTCCAGCACCTATTCTAGCCTAGAAGATCCTACTAATAAAATCTGCAAGAATGAAGCAACAGAGGGTTCTAGAGTAATTTCTCCCAATGTTGAAAGTGCCAGTATTAGTAATATGCTCAGAACACCAGTACCAATCTCTGCCGACGTCCCTACCACCCAGTCTAATCATACAGACTTGAGTAATACTTGTAACACTAAAGTAGCACAGAAGTTTGGCACTGCAGACACCACTAATAAAATCTGCAAGACTCAAGCAGCAGAAGGTTCTGAAGATTCCCGCAATGTTGAAGGTGCCAGTATTAGTAATATGCCCAGGACACCAGCACCAATTTCTACTGATCTCTCTACCATTCAACTTAACCCACCCAGTTATACAGAAGAAGCACAGAAGTCTAGCAGTCATACCACAGAAGTAACAAAAAAGTCCAGCATTGATGACACTACTAATAAAATATGCAAGACTGAAGCAGCACAGGATTCTGGAGACATTTCTCCCGACCTTGAAGTTGATAGTAATATGCCTAATAAAGAAGCAGCACAGGGCTCCAAAGATATCTCCATTTCACATTCTAACCATGAAGATGCTAATAAAAAAATCAGGATAGATACAGCGTGTAACCCCATGGCTATTTCTACTAGTCTTCAAGACCCCAGTGTTAGTAAAACATGCACAGAAGAAGCTGCGCGGAATTCTGAGCCAGTTTCTAGCACCTTTGAAGAACCGATTGTTACTAATGAACTTATACTTCCCAAAACTGAACCAATCTCACTAAAATCATGCTATATTAAGTTAGAACACGTCACATGTAAAAAAGCATTTGTTTGCCAGGTATGCCAAAGGATTTTCAGTTACAATCACAAGTTAATGAAGCATATCCTCTCCCATACCCAGGAAGAAATAAATACTATCAAAATTGAAAAGAAAGTTGTCAGAAAAAGAAAATTTGAGTGTCACTTGTGCGGCAGGGGGTATGATAGGAAAACGTCTTTGAATAGGCACTATAAGGTCCACCAAAGAAATCCTTTAACAGTGCAATTGTATACAAAGACTCCGGAAGATACTATTAAAAAGATATATTACACATGCGATTATTGCGGAATGTCGACAGTGCGGAAAAGAAGTCTGTATAAGCATATGATGATGCATGCAAAGGAGTGCTTGGTGTGTGATATATGCAAGATGCAGTTCAAAGCTGCATGGGAGCTCGTTGAACATGTGAAACGTAAGACTTGTAAGCAGCACAAAGCATTCAAGGAATGTTCAAACGAAAGAAACACACAAGATTTAGTGCTAAAGTCTTGCTATGTTAGTGTTGAACGCATGAGTATTTCAAATGAAAGAAAGACTGCAATCATTGAAGAAACTTCAAATGTTAATAGCGAGAGTGAAGACTTATTGGATGGCCAGCCTCCATTGGAGACTGATGAGGAAACGTATTACTGTGGGGTTTGTGAAGTACAGTTTGAGACGTTGGCCTCAATGGGTGACCATGTTTGTGAGCGCCCAAAGAAGCCTTTGTCATGCAATATTTGCAGCAAAAAGTTTAGATTCGAATCCGCTTTGTTTGAACATTATCGTCTACACACAGGTGAGAAACCTTTCACTTGTGACGTGTGTAAGAAGACATTTCGGTTGAAGAATCGCATGAAATTGCATATTAGGACAGTACATTTGGGTCAGAATCCTTTCTCCTGCAAGTTTTGCAAGAAGAAGTTCCGTTGTACTACCACATTGCGAAAACACGTCAGCGAACATACGGGGGAGAAGGAGAAGAAGAGGTATTCATGCAAAGTGTGCAAGAAGAAGTTTAGGTTTGAGAACGAATGCGTCGAGCACGGCCGAGTGCACACAGGGGAGAAACCGTTCACCTGCACAGTGTGCAATATGAGATTCCGGGTGGAAGTTTCTTTGCGCATCCACAGTCGGGTCCACACAGGTGAGAGGCCGTATTCGTGCGACGTGTGTAAACGATCGTTTCGTATTTGGCAAACTTTGGACGCTCACAAACGCGTGCACACCGGAGAAAAACCGTTCCAATGCGATGTCTGCCACAAAAGCTTTAGAAGGTATGATACAGTGCGGACGCATAAAAGGATACATACTGGAGAAAAGCCGTACGCTTGTGAATTTTGTTCGAAGCGCTTCAGACAGCGCAGTCATTTAAAAAGCCATCAAAAAATACACACGGGTGAGAAATCATTCAGCTGCACGATTTGTAACAAAAAGTTTGCAGAAGTTCATCAGCTGAAGAACCATGGCCGTATACACACTGGTGAGAAACCTTACTCCTGCAACGTTTGCGGAAAAGCCTTCAGGGAATCGCAGGGTCTAAAGACCCATTATAGAAAGCACACGGGTGAGAAACCGTATGAGTGTCCAGTGTGTAAGAAGCAGTGTTCACAGTCGTCTAACCTGAGGACTCATATGAAGACTCATGGGAAGAAAAGCTGGCCGTTCGCTTGTAATATTTGTGAGAAGAAGTTTCAGAGTCGGAAGAATTTGAACCAGCATTTGGTACTGCATGACGCGCATACGCCGTTTATGTGTGATGTGTGTGGGGCTCAGTTTAGAAGTAGCAGCGTTTTGGCTGTTCACGCTCGCAGCCATTACGGTGGTGAGTGA
- Protein Sequence
- MDLVKEEAAWEEEYVETLWAALYAGREARSQAPDIVTPVGRQNAVNTNVPQTKTEAVRDPDDVAATHSILKDASTNIIPKTEPVWTPEDTSTNLEDATISNTLRTLIPDGIANFSTNQPDLEDSSSNNSCDVDLIQIPEDVSSTYSSLEDPTNKICKNEATEGSRVISPNVESASISNMLRTPVPISADVPTTQSNHTDLSNTCNTKVAQKFGTADTTNKICKTQAAEGSEDSRNVEGASISNMPRTPAPISTDLSTIQLNPPSYTEEAQKSSSHTTEVTKKSSIDDTTNKICKTEAAQDSGDISPDLEVDSNMPNKEAAQGSKDISISHSNHEDANKKIRIDTACNPMAISTSLQDPSVSKTCTEEAARNSEPVSSTFEEPIVTNELILPKTEPISLKSCYIKLEHVTCKKAFVCQVCQRIFSYNHKLMKHILSHTQEEINTIKIEKKVVRKRKFECHLCGRGYDRKTSLNRHYKVHQRNPLTVQLYTKTPEDTIKKIYYTCDYCGMSTVRKRSLYKHMMMHAKECLVCDICKMQFKAAWELVEHVKRKTCKQHKAFKECSNERNTQDLVLKSCYVSVERMSISNERKTAIIEETSNVNSESEDLLDGQPPLETDEETYYCGVCEVQFETLASMGDHVCERPKKPLSCNICSKKFRFESALFEHYRLHTGEKPFTCDVCKKTFRLKNRMKLHIRTVHLGQNPFSCKFCKKKFRCTTTLRKHVSEHTGEKEKKRYSCKVCKKKFRFENECVEHGRVHTGEKPFTCTVCNMRFRVEVSLRIHSRVHTGERPYSCDVCKRSFRIWQTLDAHKRVHTGEKPFQCDVCHKSFRRYDTVRTHKRIHTGEKPYACEFCSKRFRQRSHLKSHQKIHTGEKSFSCTICNKKFAEVHQLKNHGRIHTGEKPYSCNVCGKAFRESQGLKTHYRKHTGEKPYECPVCKKQCSQSSNLRTHMKTHGKKSWPFACNICEKKFQSRKNLNQHLVLHDAHTPFMCDVCGAQFRSSSVLAVHARSHYGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155508;
- 90% Identity
- -
- 80% Identity
- -