Acra024304.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402072.1:201757-208608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00082 0.055 14.5 2.8 1 23 416 438 416 438 0.98 2 18 3e-05 0.002 19.1 1.4 1 23 458 480 458 480 0.98 3 18 2.1e-06 0.00014 22.7 3.5 1 23 503 525 503 525 0.99 4 18 0.61 41 5.5 0.0 2 21 531 550 530 551 0.92 5 18 5.8 3.9e+02 2.4 0.1 1 20 622 641 622 643 0.87 6 18 0.00017 0.011 16.7 1.2 2 23 650 671 649 671 0.96 7 18 0.00019 0.013 16.6 3.0 1 23 677 700 677 700 0.98 8 18 0.03 2 9.6 6.6 1 23 706 728 706 728 0.98 9 18 0.041 2.8 9.2 3.4 1 23 738 760 738 760 0.96 10 18 0.00022 0.015 16.3 0.7 1 23 766 788 766 788 0.98 11 18 8.1e-05 0.0055 17.7 0.5 1 23 794 816 794 816 0.98 12 18 5.4e-05 0.0036 18.3 4.2 1 23 822 844 822 844 0.98 13 18 1e-05 0.00068 20.6 4.7 1 23 850 872 850 872 0.98 14 18 0.0001 0.0071 17.4 0.8 1 23 878 900 878 900 0.98 15 18 1.6e-06 0.00011 23.0 1.5 1 23 906 928 906 928 0.98 16 18 7.5e-09 5.1e-07 30.4 1.3 1 23 934 956 934 956 0.99 17 18 0.00058 0.039 15.0 1.5 1 23 963 985 963 985 0.95 18 18 0.0045 0.31 12.2 0.0 1 23 991 1013 991 1013 0.94
Sequence Information
- Coding Sequence
- ATGGATTTGGTGAAAGAAGAGGCGGCTTGGGAGGCCGAGTATCTGGAGACACTCTGGGCAGCCCTGTACGCCGGCCGCGAGACAAGATCGCAGGCTCCAGACATCGTACCACCAGTTGCAAGACAAAATGCTGTTAACACAAATGTTCCGCAAACCAAGACGGAGGCAGTACAAGACCCTGATGATGTTGCTGCCACCCACTCAACCCTCAAAGACGCCAGTACAAATATAATACCCAAGACTGAACCATTATGGACCCCTGAAGATACGGCCACCAACCTCGAAGATGCCAGTATCAGTAATACTCTCAGAACACTAATACCAGATGGTATCGCCAATTTCTCTACCAACCAACCTGACCTTGAAGACTCCAATAGCAATAACTCATGTGACGTAGATCTAATACAGATCCCTGAGGATGTAACCAACACCTGTCCTAGCCTTGAAGATCCTGCTAATAAAATCTGCAAGACTGAAGCAACAGAGCGTTCTAGAGTCATTTCTCCCAATGTTGAAGGTGCCAGTATTAGTAATATGCTTGGAACACCAGTACCAATCCCTGCAGACGTCCCTACCACCCAGTCTAATCTTACAGACATGAGTAATGCATGTAACACAGAACTAGCGCAGAAGTCTGGCACAGAAGACACCAGTAATAAAATCTGCAAGACTGAAGCAGCAGAAGGCTCTGAAGATTCTCCCAATGTTGAAGGTGCCAGTATTGGTAGTACGCTCAGGACACCAGCACCAATTTCTAATGATGTCCCTACTGTTCAGTTTAACCTTGGAGGCCCCAGTAATACAGAAGTAGCACAGAAGTCTAGCAGTCATACCACAGAAGTAACAAAGAAGTCCAGCATTGCAGACACTACTAATAAAATGTGCAAGACTGAAGCAGCACAGGATTCTAGAGACATTTCTCCCGAACTTGAAGATGCTAGTAATATGCCTAATAAAGAAGCAGCACAGGGCTCCAAAGATATCTCCATCTCACATTCTAACCATGAAGATGCTAGTAAAACACTTAGAAATGATACAGTGTGTAACCCCATGGCTATTTCTACTAGTCTTCGAGACCTTAGTGTTAGTAAAACACGGACAGAAGAAGCTGCGCGGAATTCCGAGCCAGTTTCTAGCACCTTTGAAGAACCGATTGTTACTAATGAACTTGTACTTCCCAAAACTGAACCAATCTCACTAAAATCATGCTATATTAAGTTAGAACACGTCACATGTAAAAAAGCATTTGTATGCCAGGTATGCCAAAGGATTTTCAATTTCAAACACAAGTTAATGACGCATATCCTCTCCCATACCCAGGAAGAAATAAATACCATCAAAATTGAAAAGAAAGTTGTCAGAAAAACAAAATTTGAGTGTCACTTGTGCGGCAGGGGGTATGATAGGAAAGCATCTTTGGATAAGCACTATAGGGTCCACCAAAGAAATCCTTTAACAGTGCAATTGTATACAAAGACTCCGGAAGATACTATTAAAAAGATATATTACACATGTGATTATTGCGGAATGTCGACAGTGAGGAAAAAAAATCTGTGTAGGCATATGAAGATACATGCGAAGGAGTGCCTGGTGTGTGATACATGCAAGACGCAGTTCAAAGCGGCATGGGAGCTTGTTGAACATGTGAAACTTAAAACTTGTAGGCAACACAAAGCATTCAAGGTAGGTTCGAACAAAAGGAACACACATGATTTAGTGCTAAAGTCTTGCTATGTTAGTGTTGAACGCATGAGTATTGCAAATGAAAGAAAGACTGCAATCATAGAAGAAACTTCAAGTGTTAATAGCAATAGTGAAGACTTATTGGATGGCCAGCCTCCATTCGAGACTGATGAGGAAACATATTACTGTGGGGTTTGTGAAGTACAGTTTGAGACGTTGGCCTCAATGGGCGACCATGTCTGTGAGCGCCCAAAGAAACCTTTGTCGTGCAATATTTGCAGCAAAAAGTTTAGATTTGAATCCGCTTTGTTTGAACATTATCGTCTACACACAGGTGAGAAACCTTTCACTTGTGACGTGTGTAAGAAGATATTTCGCTTGAAATTTCACATGACATTGCATATTAGGACAGCACATTTGGGCCAGAATCCTTTCTCCTGCAAGTTTTGCAAGAAGAAGTTCCGTTGCTCTACCGCATTGCGAAAACATGTCCGCGAACATGCGGGGGAGAAGGAGAAGAAGAAGAGGTACTCATGCAAAGTGTGCAAGAAGAAGTTTAAGTTTGAGAGCGAATGCATCGAGCACGGCCGAGTGCACACAGGGGAGAAACCGTTCACCTGTACTGTGTGCAATATGAGATTCCGAGTGGCAGTTTCTTTGCGCACCCACAGTCGGGTCCACACAGGTGAGAAGCCGTATTCGTGCGACGTGTGTAAACGATCGTTTCGTGTTTGGCAAACTTTGGACGCTCACAAACGCGTGCACACCGGAGAAAAACCGTTCCAATGCGACGTCTGCCACAAAAGCTTTAGAAGGTATGATACAGTGCAGACGCATAAAAGGATACATACTGGGGAGAAGCCGTACGCTTGTGAATTTTGCTCGAAGCGCTTCACACAGCGCAGTCATTTAAAAAGCCATCAGAAAATACACACGGGTGAGAAATCATTCAGCTGCACGGTTTGTAACAAAAAGTTTACAGAAGCTAATAAGCTGAGGATCCATGGCCGTATACACACTGGTGAGAAACCTTACTCCTGCAACGTCTGCGGAAAAGCCTTCACGGAATCGCAGAGTCTAAAGACCCATTATAGAAAGCACACGGGTGAGAAACCATATGTGTGCCCGGTGTGTAACAAGCAGTTTTCACAGTCGTCTAACCTGAGGACTCATATGAAAACTCATTGTAAGAAAAGTTGGCCGTTTACTTGTAATATCTGTGAGAAGAAGTTTCAGAGTCGGAGGAGTTTGGACAAGCATTTGGTACTGCATGACGCGCATACGCCATTTATGTGTGATGTGTGTGGGGCTCAGTTTAGCAGTAGCAGTGTTTTGGCTGTTCACGCTGGCAGCCATTACGGTGGTGAGTGA
- Protein Sequence
- MDLVKEEAAWEAEYLETLWAALYAGRETRSQAPDIVPPVARQNAVNTNVPQTKTEAVQDPDDVAATHSTLKDASTNIIPKTEPLWTPEDTATNLEDASISNTLRTLIPDGIANFSTNQPDLEDSNSNNSCDVDLIQIPEDVTNTCPSLEDPANKICKTEATERSRVISPNVEGASISNMLGTPVPIPADVPTTQSNLTDMSNACNTELAQKSGTEDTSNKICKTEAAEGSEDSPNVEGASIGSTLRTPAPISNDVPTVQFNLGGPSNTEVAQKSSSHTTEVTKKSSIADTTNKMCKTEAAQDSRDISPELEDASNMPNKEAAQGSKDISISHSNHEDASKTLRNDTVCNPMAISTSLRDLSVSKTRTEEAARNSEPVSSTFEEPIVTNELVLPKTEPISLKSCYIKLEHVTCKKAFVCQVCQRIFNFKHKLMTHILSHTQEEINTIKIEKKVVRKTKFECHLCGRGYDRKASLDKHYRVHQRNPLTVQLYTKTPEDTIKKIYYTCDYCGMSTVRKKNLCRHMKIHAKECLVCDTCKTQFKAAWELVEHVKLKTCRQHKAFKVGSNKRNTHDLVLKSCYVSVERMSIANERKTAIIEETSSVNSNSEDLLDGQPPFETDEETYYCGVCEVQFETLASMGDHVCERPKKPLSCNICSKKFRFESALFEHYRLHTGEKPFTCDVCKKIFRLKFHMTLHIRTAHLGQNPFSCKFCKKKFRCSTALRKHVREHAGEKEKKKRYSCKVCKKKFKFESECIEHGRVHTGEKPFTCTVCNMRFRVAVSLRTHSRVHTGEKPYSCDVCKRSFRVWQTLDAHKRVHTGEKPFQCDVCHKSFRRYDTVQTHKRIHTGEKPYACEFCSKRFTQRSHLKSHQKIHTGEKSFSCTVCNKKFTEANKLRIHGRIHTGEKPYSCNVCGKAFTESQSLKTHYRKHTGEKPYVCPVCNKQFSQSSNLRTHMKTHCKKSWPFTCNICEKKFQSRRSLDKHLVLHDAHTPFMCDVCGAQFSSSSVLAVHAGSHYGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156461;
- 90% Identity
- -
- 80% Identity
- -