Axyl011256.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387373.1:3003023-3007071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.16 11 7.4 2.3 1 23 117 137 117 137 0.91 2 18 7.4e-05 0.0054 17.9 1.6 1 23 156 178 156 178 0.98 3 18 1.8e-05 0.0013 19.8 0.2 1 23 205 227 205 227 0.96 4 18 0.042 3.1 9.2 0.0 2 21 234 253 233 254 0.94 5 18 0.067 4.9 8.6 0.2 1 20 328 347 328 349 0.93 6 18 9.8e-05 0.0072 17.5 1.0 2 23 356 377 355 377 0.96 7 18 0.0025 0.18 13.1 4.0 1 23 383 406 383 406 0.97 8 18 0.0041 0.3 12.4 6.5 1 23 412 434 412 434 0.98 9 18 4.7 3.4e+02 2.8 4.7 1 11 443 453 443 465 0.85 10 18 0.0005 0.036 15.3 0.3 1 23 471 493 471 493 0.98 11 18 3.1e-05 0.0022 19.1 0.7 1 23 499 521 499 521 0.98 12 18 3e-05 0.0022 19.1 0.7 1 23 527 549 527 549 0.98 13 18 3.4e-05 0.0025 19.0 1.0 1 23 555 577 555 577 0.97 14 18 1e-05 0.00076 20.6 0.4 1 23 583 605 583 605 0.97 15 18 0.00035 0.026 15.8 1.1 5 23 614 632 612 632 0.96 16 18 4.7e-06 0.00034 21.7 1.7 1 23 638 660 638 660 0.97 17 18 6.3e-05 0.0046 18.1 1.9 1 23 666 688 666 688 0.98 18 18 0.00013 0.0098 17.1 0.0 2 23 695 716 694 716 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAATGCGTGCGGGTGAAAGAGGAGCCGGCGTGGGAGGCCGAGGGCGCGGAGCCGCTGTGGGCCGCGCTGGGCGCCCCCGCGGCCCCCGCGGCGCTGAAGCGGGAGCTCAAACTCGGCGACGGAGTGTACGCTGAAGACATAGACTTCGCGTTAACAGATGCAAGTTATCCAGAAACCGACACCAGCTCTGAACCAGACACAAAAGACGTAAAGGCAGCCGCTACAGTCTCTCACTCCGACCCTGGAGGCTCAGGTAAAGAGCGCGAAAGCCCAGACCTCCACAAACCTATTGACACTAAGCCTTGCTTCACCAAACTAGGACGCAAAAACCAAGTGAAAACCTTCGACTGCCCCATCTGTCACAAGCGTACGAAGAGAGAAATAAAACGACACATCCTCACTCACACTCAGGAGGAAATCGACAGCATCAAAACTGTCAAGAAGACTGGGAAAGGAAAATTTAAATGTCATATCTGCGGTGCGAGACTAGCACGCCGGTTCGGTTTGAAGAAGCATCTAAAAATCCATGCTAGAGTAGCTAAACTGGATCCTTTTCAGCAGCAACTTTATAGAAAACGTCCTAAAAAGAAATATGTGAAGAGTGTCTTTGAATGCGATGTGTGTGGGAAGCAGACAACAAGAAAAGAGAGCCTGGCGAGGCATCTCGAAGGGCATGCCGATGACGAACCGGTTGTCTGTGGACGCTGCAATGAGCCATTCAAGTATACGTGGGAACTTGTGAATCATATAAAGCTTGCAATTTGCACAGAAAATGTTAGAGTCGCTCAAAATGTTAAGAAAATTCCGGAGGTTCAGTTAAAACAGTGTGTTATAAGACTTCAACGTTTAGACGACAATGACAACAATGCTTTGAAAAGCATCGGTAAAGTTCCTGAAGTTAGCAGTGAAAATGATTTAAGCGATGAAGATGTAGCGTTAGATGACACAGCTGCTCTAGAGACCGAGGAAGAAACGTATTACTGCGGCGTTTGCGAGGAACAGTTCGAGACTTTGTCCTCGTTAGGTGACCATGTTTGCGGAAGGCCAAAGAAACCAGTGTCATGCGAGATTTGCAAGAAAAAGTTTAAATTCCGAGCTGATTTGGTCACACACACCCGTCTACACACAGGTGAGAAACCTTTCACTTGTGACGTGTGTAAGAAGACATTTCGGTTGAAGAATTGCATGAAATTGCATATTACGACAGTACATTTAGGCGAGAAACCTTTCTCCTGCAAGATTTGCAAGAAGAAGTTCCGTTGCTCTAAAACATTGCAAAAACACGTCCGCGAACATACGGGGGAGAAGGAGAAGAAGCTGTACTCATGCAAAGTGTGCAAGAAGAAGTTTAGGTGTGAGAACGAATGCGTCGAGCACGGCCGAGTGCACACAGGGGAGAAACCGTTCACCTGTACAGTGTGCAATATGAGATTCCGGGTGGAAGTTGCTTTGCGCATCCACAGTCGGGTCCACACAGGTGAGAGGCCGTATTCGTGCGACGTGTGTAAACGATCGTTTCGTATTTGGCAAACTTTGAACGCTCACAAACGCGTGCACACCGGAGAGAAACCGTTCCGATGCGATGTCTGCGACAAACGGTTTAGGACATTGAATGCTGTGACGGTGCATAAACGGGTACATACTGGAGAAAGGCCGTTTGCTTGCGAATTCTGCCCGAAGCGCTTCATACAGGCAGGCCATTTGTATACGCATCTGAAAGTGCACACAGGCGAGAAGCCCTTCGCCTGCACGGTTTGTGACAAAAGATTTGCGGACAGGAGTAAACTGGCTGTCCATAGCCGTTCCCATAGCGACGAGAAACCTTTCTCGTGCATTTGCGGGAAAGCTTTTAAAACTACAAGCGCTCTCAAGACGCACAGGAAGCTTCATACGGGGGACAAGCCGTTTGCTTGTGAGGTTTGCAAGAAGGCTTTCGTACGAAAGAGTCATGTGAAGGATCATATGCAGAGTCATACCAAGGAGTGGCCGTTTGAGTGTGAGGTCTGTCAGCGGAGGTTCCAGAGGCGGGATTACCTCCGGCTGCATAGAAAAGTGCATGGCAACGCTCCGTGCCTCGTGTGTGACGTCTGCGGGGCTAAGTTTGGAGACTCCGAGGAGTTGAGGGTGCATTTACGTGGTCACGATGTTGAGTGA
- Protein Sequence
- MSECVRVKEEPAWEAEGAEPLWAALGAPAAPAALKRELKLGDGVYAEDIDFALTDASYPETDTSSEPDTKDVKAAATVSHSDPGGSGKERESPDLHKPIDTKPCFTKLGRKNQVKTFDCPICHKRTKREIKRHILTHTQEEIDSIKTVKKTGKGKFKCHICGARLARRFGLKKHLKIHARVAKLDPFQQQLYRKRPKKKYVKSVFECDVCGKQTTRKESLARHLEGHADDEPVVCGRCNEPFKYTWELVNHIKLAICTENVRVAQNVKKIPEVQLKQCVIRLQRLDDNDNNALKSIGKVPEVSSENDLSDEDVALDDTAALETEEETYYCGVCEEQFETLSSLGDHVCGRPKKPVSCEICKKKFKFRADLVTHTRLHTGEKPFTCDVCKKTFRLKNCMKLHITTVHLGEKPFSCKICKKKFRCSKTLQKHVREHTGEKEKKLYSCKVCKKKFRCENECVEHGRVHTGEKPFTCTVCNMRFRVEVALRIHSRVHTGERPYSCDVCKRSFRIWQTLNAHKRVHTGEKPFRCDVCDKRFRTLNAVTVHKRVHTGERPFACEFCPKRFIQAGHLYTHLKVHTGEKPFACTVCDKRFADRSKLAVHSRSHSDEKPFSCICGKAFKTTSALKTHRKLHTGDKPFACEVCKKAFVRKSHVKDHMQSHTKEWPFECEVCQRRFQRRDYLRLHRKVHGNAPCLVCDVCGAKFGDSEELRVHLRGHDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155511;
- 90% Identity
- iTF_00155511;
- 80% Identity
- -