Axyl011253.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387373.1:2972415-2977100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00018 0.013 16.6 0.3 1 23 120 142 120 142 0.98 2 18 1.1e-06 7.8e-05 23.7 0.8 1 23 161 183 161 183 0.98 3 18 2.2e-05 0.0016 19.5 0.2 1 23 206 228 206 228 0.96 4 18 0.001 0.076 14.3 0.2 3 23 236 256 234 256 0.96 5 18 0.022 1.6 10.1 0.8 1 21 327 347 327 348 0.94 6 18 0.0015 0.11 13.8 5.4 1 23 354 376 354 376 0.98 7 18 4.1e-05 0.003 18.7 1.3 1 23 382 404 382 404 0.95 8 18 0.00023 0.017 16.3 1.7 2 23 410 431 410 431 0.97 9 18 0.00072 0.052 14.8 3.7 1 21 440 460 440 462 0.95 10 18 4.1e-06 0.0003 21.8 0.7 1 23 468 490 468 490 0.98 11 18 0.0051 0.37 12.1 2.7 1 23 496 518 496 518 0.93 12 18 8.8e-05 0.0064 17.6 2.4 1 23 524 546 524 546 0.99 13 18 3.1e-06 0.00023 22.2 3.7 1 23 552 574 552 574 0.99 14 18 0.34 25 6.4 6.0 1 23 580 602 580 602 0.96 15 18 0.027 2 9.8 3.9 1 23 608 630 608 630 0.97 16 18 1.9e-06 0.00014 22.9 2.5 1 23 636 658 636 658 0.98 17 18 0.0002 0.015 16.5 2.5 1 23 664 686 664 686 0.96 18 18 8.5e-06 0.00062 20.8 0.9 1 22 692 713 692 713 0.96
Sequence Information
- Coding Sequence
- ATGTCGTCGGAGTGTCCTGAGGTGAAAGAGGAGTTGGGGGAGGAAGATGAGGACGAGGGGATCCTGTGTGCCGACGTGTACGCCGGGGACGAGCTCAAACAGGAGCTTATGCTGGGCCCCGAGCTGAACGAGGCTGAGTATTTGGAGTTGGATTTGGACTCACTACCAGGTTTCCATGGATTCGGAACAGAAAAAAGCCTCCCAGAGCCCATGACATCAGAAGACCTCGCTTCTACCAAATGTCTTGAAGAGCCGCAAATATTGAACCCCAAGGCGTACTCCTACACGATTAGCAAAGAAAAGATACCACTCAAGCCTTGCTACGTCAAGCTAGAACGCATCATTCAGAAGAAGAAGTTCATATGTCAAATATGCCAGAAGGCGTTAACCGAGAAAAGAGGTCTCATGCGTCATATCCTCACGCATACACAAGACGAAATCAACACCATCAAAATCGAAAAGAAAATAGGGACAGGGAAATTCAAATGCAAAATTTGCGGCAAGAGACTGTCCCGTAAAGACGGTCTGGTCAAACATCTAAAAATCCATGCGAAACAAGACCCATTCACGAAGCAATTGTTGAAGAAGATGCCGGAGAAAATTGTGAAGATTTGGTATGAATGTGATCTTTGCGGGAAACAGACGACGAGGAAGGAGAGTCTGGCGAGGCATCTGGAGGGGCACGAGAAGCAGGAGCCGGTCTGTTGTACGGTTTGCAATGAACCGTTTAAGATTGCTTGGGAGCTCATGGACCATATGAAGGTTCATGATGAAGAAAATCAGGTCAAAGCTGTCCTTGATGAGAACGCCTTAGAAGAGTGTGTAAAATCCGGTAGCAAGGCGGATGAAATCGATGGAATTGACGAATCTTTGAAAACTGAAGAACCTGAAGTTGCAAGCAGTGAGGAAGATATAAATGATGATGAAATTGATGAATTACTTGACGGAGAGCCTGCGCTAGGGACTAACGAAGAAACATTCTACTGTGGCATCTGTGAGAAACAATTCGAGAGTATGTCACTGCTAGGGGAACACCAATGCAAAGGACCAAAGAAACCATTCATTTGCAACGTTTGCAATTTAAAATTTAAGCACAAGTGCCTTTTAGTCACGCATTACCGAGTTCACACAGGCGAGAAGCCGTTTTCTTGCAAAATATGCAAGAAACAATTCAGGACAAAGCAAGAATTGAGAATCCATGAAGTCGTACACGCAGATCAGAAACCAACGTGCGATATATGCCAGAAACAGTTTGCTCAATCAAAGTCGTTGCGAGATCACAAAAAGTTGCACACGGGTCGGAAACCAGAGAAACCGTATTCGTGCAAAGTGTGTAAGAAAAAATACAAATCGCCGGGTGAATTAGAAACGCATTATCGCTGCCACACAGGCGACCGACCTTTCTCCTGTGACATATGTAAGAAACAGTTCATGCGGAAGAGTGCTTTAGTAAACCATATACTAACGCACACTGACAAAAAACCATATTCTTGTCAAGAATGCAAAAAACAGTTCCGCGAGAGCCGCAAATTAAAAGAACACAGCACCCTTCACACCGGAGAGAAACAATACACATGCGAAGTGTGCAAGAAACAGTTTCGTCTCAGTTCCACATTTGAAAACCACAAGCGCGTACACACAGGTGAGAAACCGTTTACGTGTGAATTCTGCCCGCAACGATTCAGACAGAATGCTCATCTAATCCGTCACCGACGGACGCACACGGGAGAGACACCGTTCAGTTGCAAGTTTTGTAACAAACAATTCACAGACAAGTTTATTCTAACATGCCATGTTCGAACTCACACGGGTGAGAAACCGTACACTTGTGATGTGTGCGATAAAAAGTTCGCGACGCTCTGTTCGTGTGCTGTGCACAAGCGCGTTCACACAGGCGAGAAACCGTATCAATGCAAAGTGTGCAAGAAGCAGTTTGGACGGAGTTCTCACTTGTCTGCCCACATGATTTCTCACTCTAAAGTGCGGGCGCACATTTGCGATGTGTGTAAGAAGAGTTTCAGGCAACGCAGGTCCTTGTTGGGCCATTTGAAGCTGCACACAGGGGAGAAACCGTATGTGTGTGATGTGTGCGGGCAGAAATTTACACACAGCAGCGAGTTGAGTTCGCACAGGCGGCGATGCCTCGAGAAAGAGTTGGTTGAAAAAGTATAG
- Protein Sequence
- MSSECPEVKEELGEEDEDEGILCADVYAGDELKQELMLGPELNEAEYLELDLDSLPGFHGFGTEKSLPEPMTSEDLASTKCLEEPQILNPKAYSYTISKEKIPLKPCYVKLERIIQKKKFICQICQKALTEKRGLMRHILTHTQDEINTIKIEKKIGTGKFKCKICGKRLSRKDGLVKHLKIHAKQDPFTKQLLKKMPEKIVKIWYECDLCGKQTTRKESLARHLEGHEKQEPVCCTVCNEPFKIAWELMDHMKVHDEENQVKAVLDENALEECVKSGSKADEIDGIDESLKTEEPEVASSEEDINDDEIDELLDGEPALGTNEETFYCGICEKQFESMSLLGEHQCKGPKKPFICNVCNLKFKHKCLLVTHYRVHTGEKPFSCKICKKQFRTKQELRIHEVVHADQKPTCDICQKQFAQSKSLRDHKKLHTGRKPEKPYSCKVCKKKYKSPGELETHYRCHTGDRPFSCDICKKQFMRKSALVNHILTHTDKKPYSCQECKKQFRESRKLKEHSTLHTGEKQYTCEVCKKQFRLSSTFENHKRVHTGEKPFTCEFCPQRFRQNAHLIRHRRTHTGETPFSCKFCNKQFTDKFILTCHVRTHTGEKPYTCDVCDKKFATLCSCAVHKRVHTGEKPYQCKVCKKQFGRSSHLSAHMISHSKVRAHICDVCKKSFRQRRSLLGHLKLHTGEKPYVCDVCGQKFTHSSELSSHRRRCLEKELVEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155509;
- 90% Identity
- iTF_00155509;
- 80% Identity
- -