Acra024303.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402072.1:195030-198877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.3e-05 0.0022 18.9 1.1 1 23 120 142 120 142 0.99 2 18 1.1e-06 7.4e-05 23.6 0.9 1 23 161 183 161 183 0.98 3 18 3.7e-05 0.0025 18.8 0.4 1 23 206 228 206 228 0.96 4 18 0.001 0.068 14.3 0.2 3 23 236 256 234 256 0.96 5 18 0.021 1.5 10.1 0.8 1 21 327 347 327 348 0.94 6 18 0.0085 0.57 11.3 4.9 1 23 354 376 354 376 0.98 7 18 2e-05 0.0014 19.6 0.7 1 23 382 404 382 404 0.95 8 18 0.0011 0.073 14.2 3.4 2 23 410 431 410 431 0.97 9 18 2.3e-05 0.0016 19.4 1.7 1 23 440 462 440 462 0.98 10 18 4e-06 0.00027 21.8 0.7 1 23 468 490 468 490 0.98 11 18 0.0065 0.44 11.7 2.5 1 23 496 518 496 518 0.93 12 18 8.4e-05 0.0057 17.6 2.4 1 23 524 546 524 546 0.99 13 18 1.4e-05 0.00092 20.1 3.9 1 23 552 574 552 574 0.99 14 18 0.32 22 6.4 6.0 1 23 580 602 580 602 0.96 15 18 0.026 1.7 9.8 3.9 1 23 608 630 608 630 0.97 16 18 9.8e-06 0.00066 20.6 1.9 1 23 636 658 636 658 0.98 17 18 0.00036 0.025 15.6 3.1 1 23 664 686 664 686 0.96 18 18 8.1e-06 0.00055 20.8 0.9 1 22 692 713 692 713 0.96
Sequence Information
- Coding Sequence
- ATGTCGTCGGAGTGTCCAGAGGTGAAAGAGGAGTTGGAGATCCTAGATGAGGACGAGGGGAACCTGTGGGCCGACTTGTACGCCGGAGACGAGCTCAAACAGGAGCTTATGCTGGGCCCCGAGCTGAACGAGGCTGAGCATTTGGATTTGGATTTGGACTCACTACCAGGTTACCATGGATTTGGAACAGAAAAAAGCCTCCCAGAGCCCAATACATCAGGAGACCTCGCTTCTACCAAATGCCTTGAAGAACCGCAAATACTGGACCTCAAGGCGTACTCCTACATGGTTAGCAAAGAAAGGATACCACTCAAGCCTTGCTACGTCAAGCTAGAACGCATCATCCAGAAGAAGAGGTTCAAATGCCAAATATGCCAGAAGACGTTAACCGAGAAAAGAGGTCTCATGCGACATATCCTCACGCATACACAAGACGAAATTAACACCATCAAAATCGAAAAGAAAATAGGGACAGGGAAATTCAAATGCAAAATTTGCGGCAAGAGACTGACCCGAAAAGATGGTCTGGTCAAACATCTAAAAATCCACGCGAAACAAGACCCATTCACGAAGCAATTGATGAAGAAAATCCCGGAGAAGATTGTGAAGATTTGGTATGAGTGTGATCTTTGTGGGAAACAGACGACGAGGAAGACAAGTCTGGCGAAGCATCTGGAGGGGCACGAGAAGCAGGAGCCGGTCTGTTGTACGGTTTGCAACGAACCGTTTAAGATTGCTTGGGAGCTCATGGACCATATGAAGGTTCATGATGAAGAAAATCAAGTCAAAACTGTGCTTGATGAGAACGCCTTAGAAGAGTGTGTAAAATCCGGTAGCAAGGCGGATAAAATCGATGGAACTGACGAATCTTTGAAAACTGAAGAACCTGAAGTTGCAAGCAGTGAGGAAGATATAAATGATGATGAAATTGATGAATTACTTGATGGAGAGCCTGTGCTAGAGACTAATGAAGAAACATTCTACTGTGGCATCTGTGAGAAACAATTCGAGAGTATGTCACTGCTAGGGGAACACCAATGCAAAGGACCAAAGAAACCATTCATTTGCAACGTTTGCAATTTAAAGTTCCAGCACAAGTGCCTTTTAGTCACGCATTACCGAGTTCACACAGGTGAGAAACCGTTTTCTTGCAAAATATGCAAGAAACAATTCAGGACAAAGGCAGAATTGAGAATCCATGAAGTCGTACACGCAGATCAGAAACCAACGTGCGATATATGCCATAAACAGTTTGCTCAATATAAGTCGTTGCGAGATCACAAAAAGTTGCACACGGGCCGGAGACCAGAGAAACCGTATTCGTGCAAAGTGTGTAAGAAAAAATACAAAACGCCGGGCGAATTAGATACGCATTATCGCAGCCACACAGGCGACCGACCTTTCTCCTGTGACATATGTAAGAAACAGTTCATGCGGAAGAGTGCTTTAGTAAACCATATACTAACGCACACTGACAAAAAACCATATTCTTGTCAAGTATGCAAAAAACAGTTCCGCGAGAGCCGCAAATTAAAAGAACACAGCACCCTTCACACCGGTGAGAAACAGTACACATGCGAAGTGTGCAAGAAACAGTTTCGTCTCAGTTCCACATTTGAAAACCACAAGCGCGTTCACACAGGTGAGAAACCGTTTACGTGTGAATTCTGCCCGCAACGATTCAAACAGACTGCTCATCTAATCCGTCACCGACGGACGCACACGGGCGAGAAACCGTTCAGTTGCAAGTTTTGTAACAAACAATTCACAGATAAGTTTATTCTAACATGCCATGTTCGAACTCACACGGGTGAGAAACCGTACACTTGCGATGTGTGCGATAAAAAGTTCGCGACGCTCTGCTCGTGCGCGGTGCACAAGCGCGTTCACACAGGCGAGAAACCGTATCAATGCAAAGTGTGCAAGATGCAGTTTGGACGGAGTTCTCACTTGTCTGCCCACATGATTTCTCACTCTAAAGTGCGGGCGTACATTTGCGATGTGTGTAAGAAGAGTTTCAAGCAACGTAGGCACTTGTTGGGCCATTCGAAGCTGCACACAGGGGAGAAACCGTATGTGTGTGATGTCTGCGGGCAGAAATTTACACACAGCAGCGAGTTGAGCTCGCACAGGCGGCGATGCCTCGAGAAAGAGTTGATTGATATAGTATAG
- Protein Sequence
- MSSECPEVKEELEILDEDEGNLWADLYAGDELKQELMLGPELNEAEHLDLDLDSLPGYHGFGTEKSLPEPNTSGDLASTKCLEEPQILDLKAYSYMVSKERIPLKPCYVKLERIIQKKRFKCQICQKTLTEKRGLMRHILTHTQDEINTIKIEKKIGTGKFKCKICGKRLTRKDGLVKHLKIHAKQDPFTKQLMKKIPEKIVKIWYECDLCGKQTTRKTSLAKHLEGHEKQEPVCCTVCNEPFKIAWELMDHMKVHDEENQVKTVLDENALEECVKSGSKADKIDGTDESLKTEEPEVASSEEDINDDEIDELLDGEPVLETNEETFYCGICEKQFESMSLLGEHQCKGPKKPFICNVCNLKFQHKCLLVTHYRVHTGEKPFSCKICKKQFRTKAELRIHEVVHADQKPTCDICHKQFAQYKSLRDHKKLHTGRRPEKPYSCKVCKKKYKTPGELDTHYRSHTGDRPFSCDICKKQFMRKSALVNHILTHTDKKPYSCQVCKKQFRESRKLKEHSTLHTGEKQYTCEVCKKQFRLSSTFENHKRVHTGEKPFTCEFCPQRFKQTAHLIRHRRTHTGEKPFSCKFCNKQFTDKFILTCHVRTHTGEKPYTCDVCDKKFATLCSCAVHKRVHTGEKPYQCKVCKMQFGRSSHLSAHMISHSKVRAYICDVCKKSFKQRRHLLGHSKLHTGEKPYVCDVCGQKFTHSSELSSHRRRCLEKELIDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156458;
- 90% Identity
- iTF_00156458;
- 80% Identity
- -