Acra001909.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- Zfy2
- Assembly
- GCA_947859365.1
- Location
- OX402063.1:18222612-18229938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.7 1.8e+02 3.5 0.0 1 23 185 207 185 207 0.93 2 17 1.3 87 4.5 0.0 3 23 303 324 302 324 0.93 3 17 6.4e-06 0.00043 21.2 0.3 2 23 350 371 350 371 0.97 4 17 0.0068 0.46 11.6 0.1 2 23 380 402 379 402 0.94 5 17 3 2e+02 3.3 0.0 1 23 408 430 408 430 0.84 6 17 0.023 1.5 10.0 0.1 1 23 436 460 436 460 0.92 7 17 0.00014 0.0097 16.9 3.5 1 23 466 488 466 488 0.96 8 17 2.9 2e+02 3.4 3.5 1 17 595 611 595 617 0.82 9 17 0.00031 0.021 15.9 1.3 2 23 624 646 623 646 0.92 10 17 6.8e-05 0.0046 17.9 2.9 3 23 654 674 653 674 0.98 11 17 0.0013 0.087 13.9 1.7 1 23 680 702 680 702 0.96 12 17 0.016 1.1 10.5 0.6 1 23 708 730 708 730 0.97 13 17 0.00038 0.026 15.6 0.1 3 23 775 796 774 796 0.95 14 17 0.00015 0.01 16.9 2.2 1 23 802 824 802 824 0.96 15 17 0.0029 0.19 12.8 0.0 1 23 830 852 830 852 0.98 16 17 0.018 1.2 10.3 0.2 6 23 864 881 857 881 0.88 17 17 0.00047 0.031 15.3 0.8 6 23 891 908 891 908 0.99
Sequence Information
- Coding Sequence
- ATGAATAACGCTACCGAGCAAATATTTTTACCAAGTTCCTCGGGTACCCAGGATCAGCTCGGCCTGCCAAAACCCGGGAATGGACCGCAGCCAGTTAATCTCGACAGTGTGCAGGAGTTTTCAAAGGTGTGCCGGGTGTGTGCGGCTGTATCCGAGCTGGTCATGCCCATATTCAGTGGGGAGGGCTTGCAGAACAACCTAGCAGACAAGATTCACAAGCATCTTCCCATTAAGGTGTCGGAGAGCGACAGTCCAGGTCTGCCGGTGGTGGTGTGCTACCAGTGCGCGAGCACGCTCCTCGCCACGCACGAGCTGGTGCAGTGCGCCGCGCAGGCCGACGCCGCCCTGCGCACGCGCAGCGCCGCACTCGCCGCCGCCGCCGCCGCCGCGCGCCGCCTTCAAGAGAAAGAGGAAAGTTTGCGAGCAGCTCAAGAACGCGACACGATCGAGGGGACCTCACAGTGTGACCCATTAGTGTTAACCGCGGTCGTTAAAAAAGTGCTCGCGAATTATTTCCGAAAGTTGAACGTGGACGAGAGCGAGGATTTCGTGTTCGTGTGTCAGCCGTGTCGGTGGACGGCCGCGACGCCGGACGCGCTCGCCGCGCACGTGACCGCGCACGCGCCGCGCGGGCCCGCCGCCGCCGCGCGCTTCGTGCGCGACCACGTCACCTTCGACCAGCCGCTGGAGCCCGAGCCGCCCCCGCGCCCGCCCCCGCCCGCCCGCTGCTGCCCCTTCTGCGACAGCGCGTTCTCGTCCGCCGCGCGCTTCGCCTGCCACCTGGCCGAGCACGTGACCGTCGGCCCGAGCAGCCCCGTCGAGTGCTGCGGCCGGCTGTACCGCGCGGCGGGCGCGCTCGCGCGGCACGCGCACGCCGCGCACGGGCGCGCGCCCGCCGCCGCCGCCTGCCGCGCCTGCGGGCACCGCGCCGCCGGGCCCGCCGCGCTCGCCCGGCACGTGCGCCGCGCCCACGCGCCCGCCGAGCCGCGCGCGCGCCCGCGCGTCGCGTCCCCGCCCCGCCCCGCCACACTCAAGCACGTGCCGGCGCGCTGCCCGAGCTGCGGCAAGACCTTCTCCAACAAGTACAACATGGCGGCGCACGCGCGCGCGCACGACGCAGGCCCGCCCGCGCGCCTGCCCTGCCCGCAGTGCCCGCGCCACTACGGCAGCCGCGGCGCGCTCGCGCAGCACGCGCGGCTCGTGCACGCCGGCGCGCTGCGCTACGCGTGCGGCGCGTGCGGGGAGCGCTTCGGCACGCGCGCGGCGCGCGACGCGCACGCGGCGCTGCACTCGGGGCTGCGGCCGCACGCGTGTCCTTACACCGGCTGCGGCGCCGCCTTCCGCGCGCGCAACTCGCTGCTGCGCCACCTGGACGCGCACCGCGGCCTGCGCGCGCACGCCTGCCCGCACTGCGCGCGCGCCTTCCGCCGCGCCTCGCACCTCGCCTACCACCTGACCACGCACCGGCCCCACTCGTGCCGCGACTCGAGCGACGACGACCGCCCGCTGGCGACCCTCGCCGCCGAGAAACCGACCGACCGATACGAGGCCTTTTACGCGGCCCTTCTCAATTTTCGGAATCATTTCCTGGGCGAGCACGGGGCTCGGGCCGCCTACCCGGAGTTCACGGAGTCCAGCGAGGAATCGACGACGGAGCGCGCGGCGGCGGACCCGGAGCTGCTGGACGATCTGTCGGGCGGCAACATGCGCGTGTCGCGACTGGACGCCAGCACCCGGCTGGCGCTGGCGCGGGCGGTCGGGCGCGCGGGCGGGCGCGTGTGGTACTCGTGCGGCACGTGCGGCAAGCGTCTCAGCAGCGCGCACACGTTCGTGTTCCACTGCCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGGCTGCAGCGCCACCTGGCGGAGACGCACGAGCGGCGGCGGCGGCGCGCGTGCCGGCACTGCGCGCGCACGTTCGCCAACTCGCAGAACCTGAAGCAGCACCTGCGCACGCACACGGGCGAGCGGCCGCACGCGTGCGCGCTGTGCCCGGCCCGCTTCGCGCACGCCGGGTCGCTGCACGCGCACCGCCGCACGCACGAGCCGGCGCGCCCGCACCGCTGCGCGCGCTGCCCCGCCGCCTTCCGCCTGCGCGCCGGCCTAGCCCGCCACAACCGCAAACACACCCATCCACACGCGCCCGCACCACCGCCCGCCCCCGCCCCCGCCCCGCCCGAGACGAGATCAGGAGCGTACGTAACGAAAACTCAAAGCGCGACCGTCGAAAAGGAGGCGCGGGCGCGGCGCCGGCGGCACTGCCCCGCCTGCGGGCTCGGGTTCTCCGACGCCGGGAACCTGTCGCGACACGTCCGCGCCGCGCACGCGCAGCTCCGCCCGCACGCGTGCGCCCGCTGCGACGCGGCGTTCTCCCGCCGGGATCACCTCCGCGACCATGAACGAACCCACTTAGAGGCGCGGGAGTTTGTGTGCGCGGTGTGTGGCGTAGCATCCCGCTCGGCGGCGGCGCTGCGGTCTCACGCGCGGAGTCACGCGCCGCGGCGCCACGCGTGCCCCGCGCCGCCGTGCCGTGCCACGTTCCGGCGCCGCGCCGAGCTCCGCGCGCATTTGAGCGTGCACACTGGCGAGCGTGCCCACGCCTGCCCGTGCGGGAAAACCTTCCGTCTGCGCGCGCAACTCACGCGCCACGCGCGCACGCACCGCTGA
- Protein Sequence
- MNNATEQIFLPSSSGTQDQLGLPKPGNGPQPVNLDSVQEFSKVCRVCAAVSELVMPIFSGEGLQNNLADKIHKHLPIKVSESDSPGLPVVVCYQCASTLLATHELVQCAAQADAALRTRSAALAAAAAAARRLQEKEESLRAAQERDTIEGTSQCDPLVLTAVVKKVLANYFRKLNVDESEDFVFVCQPCRWTAATPDALAAHVTAHAPRGPAAAARFVRDHVTFDQPLEPEPPPRPPPPARCCPFCDSAFSSAARFACHLAEHVTVGPSSPVECCGRLYRAAGALARHAHAAHGRAPAAAACRACGHRAAGPAALARHVRRAHAPAEPRARPRVASPPRPATLKHVPARCPSCGKTFSNKYNMAAHARAHDAGPPARLPCPQCPRHYGSRGALAQHARLVHAGALRYACGACGERFGTRAARDAHAALHSGLRPHACPYTGCGAAFRARNSLLRHLDAHRGLRAHACPHCARAFRRASHLAYHLTTHRPHSCRDSSDDDRPLATLAAEKPTDRYEAFYAALLNFRNHFLGEHGARAAYPEFTESSEESTTERAAADPELLDDLSGGNMRVSRLDASTRLALARAVGRAGGRVWYSCGTCGKRLSSAHTFVFHCRIHTGERPCVCHVCGKQFRAPNGLQRHLAETHERRRRRACRHCARTFANSQNLKQHLRTHTGERPHACALCPARFAHAGSLHAHRRTHEPARPHRCARCPAAFRLRAGLARHNRKHTHPHAPAPPPAPAPAPPETRSGAYVTKTQSATVEKEARARRRRHCPACGLGFSDAGNLSRHVRAAHAQLRPHACARCDAAFSRRDHLRDHERTHLEAREFVCAVCGVASRSAAALRSHARSHAPRRHACPAPPCRATFRRRAELRAHLSVHTGERAHACPCGKTFRLRAQLTRHARTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156478;
- 90% Identity
- -
- 80% Identity
- -