Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402051.1:16645409-16656095[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.012 0.82 10.9 0.6 3 23 699 720 698 720 0.96

2 23 0.63 43 5.5 0.2 1 21 1102 1122 1102 1123 0.96

3 23 8.7 5.9e+02 1.9 0.3 1 22 1165 1186 1165 1188 0.82

4 23 0.0015 0.1 13.7 0.7 3 21 1199 1217 1197 1218 0.95

5 23 0.85 57 5.1 0.3 3 23 1227 1248 1225 1248 0.91

6 23 0.0095 0.64 11.2 0.2 3 23 1268 1289 1266 1289 0.96

7 23 0.015 1 10.6 2.4 1 23 1295 1318 1295 1318 0.92

8 23 0.16 11 7.3 0.0 1 23 1344 1367 1344 1367 0.90

9 23 0.024 1.6 9.9 3.4 1 23 1372 1394 1372 1394 0.97

10 23 0.025 1.7 9.9 0.3 1 23 1400 1423 1400 1423 0.95

11 23 0.003 0.2 12.8 1.3 1 23 1436 1458 1436 1458 0.97

12 23 0.00023 0.016 16.3 1.8 1 23 1507 1530 1507 1530 0.97

13 23 0.0088 0.6 11.3 1.8 1 23 1606 1629 1606 1629 0.96

14 23 0.0014 0.097 13.8 2.1 2 23 1654 1676 1653 1676 0.95

15 23 0.11 7.6 7.8 0.1 2 23 1682 1704 1681 1704 0.93

16 23 0.0085 0.57 11.3 0.3 1 21 1745 1765 1745 1766 0.95

17 23 0.0016 0.11 13.6 0.6 1 23 1776 1798 1776 1798 0.93

18 23 0.00015 0.0098 16.9 0.3 2 23 1893 1915 1893 1915 0.93

19 23 4.3e-07 2.9e-05 24.9 1.4 3 23 1922 1942 1921 1942 0.98

20 23 0.0088 0.6 11.3 0.5 3 23 1965 1985 1963 1986 0.95

21 23 0.12 8.2 7.7 0.0 1 23 2007 2029 2007 2029 0.98

22 23 0.036 2.4 9.4 0.6 1 23 2035 2058 2035 2058 0.95

23 23 0.00066 0.044 14.8 0.5 1 23 2066 2089 2066 2089 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.012	0.82	10.9	0.6	3	23	699	720	698	720	0.96
2	23	0.63	43	5.5	0.2	1	21	1102	1122	1102	1123	0.96
3	23	8.7	5.9e+02	1.9	0.3	1	22	1165	1186	1165	1188	0.82
4	23	0.0015	0.1	13.7	0.7	3	21	1199	1217	1197	1218	0.95
5	23	0.85	57	5.1	0.3	3	23	1227	1248	1225	1248	0.91
6	23	0.0095	0.64	11.2	0.2	3	23	1268	1289	1266	1289	0.96
7	23	0.015	1	10.6	2.4	1	23	1295	1318	1295	1318	0.92
8	23	0.16	11	7.3	0.0	1	23	1344	1367	1344	1367	0.90
9	23	0.024	1.6	9.9	3.4	1	23	1372	1394	1372	1394	0.97
10	23	0.025	1.7	9.9	0.3	1	23	1400	1423	1400	1423	0.95
11	23	0.003	0.2	12.8	1.3	1	23	1436	1458	1436	1458	0.97
12	23	0.00023	0.016	16.3	1.8	1	23	1507	1530	1507	1530	0.97
13	23	0.0088	0.6	11.3	1.8	1	23	1606	1629	1606	1629	0.96
14	23	0.0014	0.097	13.8	2.1	2	23	1654	1676	1653	1676	0.95
15	23	0.11	7.6	7.8	0.1	2	23	1682	1704	1681	1704	0.93
16	23	0.0085	0.57	11.3	0.3	1	21	1745	1765	1745	1766	0.95
17	23	0.0016	0.11	13.6	0.6	1	23	1776	1798	1776	1798	0.93
18	23	0.00015	0.0098	16.9	0.3	2	23	1893	1915	1893	1915	0.93
19	23	4.3e-07	2.9e-05	24.9	1.4	3	23	1922	1942	1921	1942	0.98
20	23	0.0088	0.6	11.3	0.5	3	23	1965	1985	1963	1986	0.95
21	23	0.12	8.2	7.7	0.0	1	23	2007	2029	2007	2029	0.98
22	23	0.036	2.4	9.4	0.6	1	23	2035	2058	2035	2058	0.95
23	23	0.00066	0.044	14.8	0.5	1	23	2066	2089	2066	2089	0.95

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAAATACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCACGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCATTCAGATAAACGAGAATGACGACCTGCCTACTAATGCCTGCAGAAAATGCGTGGACAATGTCAATAACTGGCATATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTTTGATTAAAAAAGATGGCAGCCAACTAGAAGAGCTGAATATTAAAAGTGAACCACTGTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGGCATATCGAGAGGAGGCTGCTGGTACCAGCAAAGTGCAGCCCGAAGGCCCTCCTATCTTGGCTTCGCTGGGACTCACGCCGCGGAGTGATAAGAATTATGTTGACCCTAGAATGGATTGGCACCGAGTCCTTGCTATTTTGGACATGGTTCAAGATGATGATGTTATCAATTCCCTGCAGTCTGCTGAAGAATGTGACATACTACTGCAATCTGATCATGATTCAGATTCTGACATAGAATTGGAATGTGACCTTGATGACGCCTATATTGATTGTAAAAATGGATACAAGTCGAGAGACCATAAAATAATTTCAAAGAGACCATTGATATCTGGTGCTGAAAATTACCCAAAGGTTAGGGATGCTATGACATTGAGGAAGAGAAGCGGTCGGGAGTACAAACCTTGCCCGCAACCTAAACATGCTTGGGAGTTGATTTTCACCAATGACCTACTTGAACTGATTGTCACAGCTACTAATGAAAACATCACCAAAAATGGCAGAAGCTTTTCCTGTGGCACCAATACATCTGAAATAAAAACACTTATCGGTATATTATATTTTCACGGCATAATGAGGTCAACTCATCAGAAATTGAAAGACTTATGGCATGTCCAATATGGGTTAACTTGCATTAAAAATGCTATGAAGTTTGAAAGAGTTAAGTTTCTTCTTGAGAACTTGTATTTTTATAATGATGATGATGAAAATCTCATGCAGTTTGACATTATGAAGCAAATGCGTACAGTGTTGGAGATATTTACTTTGAATTGCCGATCAGCGTATCACATTGAAGATATTGCAGTTATTGATGAGATACTTGTACCTGTTTTTGGTCCAGCTCCATTCAGATTTGATATAGAAAATAAGGCACTTAAATCTGGTATTAAAATGGTACTACTAGTTGATCCTAAAAATTTTTATATAAGCAATTTGGATATCATTACTGATTCATATTTTAGAGCGGATGAGATAGTTAGTAAATTAGTCCAACATTTGGCTGGAACTGGCAGAGTTATAGTCATGGACAACTGGTTTTCGTCATACACCTTGATTGAGAAGTTGAAGCATGAATACAAACTCTTTTGTTTGGTGGCTTTGAAACAAAAAGATGAGATTATTCCCCCTTTCTTTCTGTCACAAGATAGGATGGCAAAACCAGTCCTGGTGGGATATTTAGTTGATGGTTACACATTAACTTCTCAGATGATTTCTAAAACAAAGTCAGTCAATGTACTGACCAACGATCCGAAGTTTAACAAAAAAGGTCTCTTCAAGAAATCATCTGCGGCAACAGAATATAAGCGGAACCAATCTGCAGTTGAAGTTGTAGACGTGCTGATGCATTATTATACTACCATGCAGTACACTAACAGTTGGATGATGTCATTATTCTTTTCATTACTTAACATAGCCTCTGTCAATGCTCAAGTGATCTGGTCAACTTACAACAGGCAGGACGTCGTGAAGCGCAGATTGTTTATACAAGAGCTGGCTCTAAGCCTCATGAAGACAGATGCTTCATTCCCAATGTCTCCAATAAACCAAGCTTTATTGAAGTGTAGTTCTAAGGGCGTCGAAAGCGAAAAAGACGAGGAAGAAGACGAAGATGACGAAATGATTGAGCCCGCCCAGCAGTACAACAAAGTGGCGAGCATGCCCGAGGTGTCCATCACAGTGATGCGGCCGACGGGCGAGACGCTCCACGCTCGGCAGGGCATCCAGCAACTAGCCAGCAAGGACTGCCTGGTCTGCGGCCGCGCCTACCGCTATTCGCACAACGCGCGCCGCCACGAACTCACCGCACACGGCTTCGACAGGTACACCAACAAGATCAACACCAAAAAAACAAAAACCCACATGCAACCGAAACTCAGACTCAACCCGTTCAATCCCAAAGCTCGGCTCATGCCCAACCCCATTAGCCACAAATTGCAATTCCAAAAACCGATGCCAAATCGCATTATGCCATCTAGAATTGTCGCCCCACCGAAACCGATACCGATCAAAACCTCAAAACCCGTACACAATAATCTACCTTATCCTTTGAGAATAAAAGCACTTAAGGATTTGCAAATTAAGAAAAAAGAACCGCAAATTTTGAAAACTTTGCTCACGTCTAAACCCGAATATTTGGTTTCCGAACCTGCTATTATTAATTCGGGCCCGGAAAGTCCAGAAACTTTAATATCAGAACCAGAGATTGCCTCATTCCAAGTTGAAACTATCTTGTCCGAACCTGGATTAGATCAAAACAACGAAGAAGAAGAAGAGGTTGATGAATCCCAAAATCAAAATCAACATTACGATACTGTTGATATGGAATCTGATCATGAAATTGAGATCGCACGTCAAAAAGAAAATGATGGTGAAATGGATGAAAATCAGGCTGAACACGATGAAGATGAAATGCAACATGACAATGAAAACATGGACAATACGGAAGGTGAAATGAGTGATAATGAGAATGGACATCAAGAGGAGGATGAAGAACAAGGTGAAAGTCAGGGTGATATGATCATAGAGGAGCATAATGAAGCTCAAGGTGAAGACGGTGAAGGAGAAAATGACGAAGACAATGGAGATAGAGACGAAGATCAGGATGGCAATGAAGAAAATGAAAACGATGAAGATGAAGATCTTCCTCCAGGTTTAGCACCTGTTGTTGAAATTAACGAAGACCTGCAAACTAACTCTTATAACAGTGAGCAAAATGAAGAAGAGGAGGAAGAACTCGACGAATCAGCTGCTAATGACAATATCGACGAAGATGTCAAGGAGCTAGATCCTGACAAGGTTTATGTCACGAAAACTCAAAGAGATTTTATTCAAAAGTATAGAGACATTATTCAGCAGATTAATACCAAGCGATGTCTCTGCTGCGATAGGGATCATCCTCGTAGAAAAGCTGTCATCCAACATCTTCAGAAAAATGGACACAAAGTACCAAAACACACATGTTACAATTGCGTTGTAACTTTTGGTCACATTGGCGCGTTACTTAGCCACATGCGTGCCAATGTTTGCACAGATCTATGGAAGATAATCTACAACGAAAATGGAATAACTGACGACTTGGTGATGGAAGATGAGCCCAAAGATAATAAAGTGCAATATAAGGATATTTTCAATGCCAGATCGTATGCGTGTAAACTGTGTCCAGCTAAGTTCCAATTGAAACAGTTTATTATGAAACACGTTCTGGATGTTCACGAAGATGGTCAATCCAGGGTGCCCATGGCTTGCGTACACTGCGGGTCGAGGTTCAAAGACAAATCCTTGTGGAAGAGACACATCCGGAATGGAGAATGTACAGTTTACATTGCATGCGATCTTTGCACTGAAAAATTCGTAAATATGCAAGATTTTAACGACCATGCTCTACATGTGCATGCTGGCAGTTTCGATCCAGATAATCAAAACAAGTGCATCGACGGTCGTCCCACAGATTGCCCTCTGTGCGGTAAAAAGAATAGTAACTACCCGAATTTGGTGAAACATATAAAGTCAGCGCATAATGAAGACAAGCCTCATTACTGTCAACATTGCGATGCCAAATTTGAGCAAACTCCTGATTTGAACAAGCACATTTACGCTCAGCATTCAGATAAAGTAATGGGTGCACAACCAATGGAACCAGACATGTCAATCATCAAGGAAGAAGCTGAGGAGTATCATTATTCCTGCACGGAATGCAACGCTATATTCGAAACCGTCGACGCCTGGACGGACCATCAGGTAGCTGAACACAATCAAGTCGCCCATCATTGCGACCAGTGTGAAAAGAAGTTCCTGCGGCCATCAGAACTAGCAGAACACAAAAACACTCATTTGAGAGTCAAATTCTATCCTTGCAGTGTTTGCTCTAATTCATACAGTACTCCACAAAAGTTATCTGAGCACGTGCAACAGTCCCATCCGGGTGCCTCGGCTTACGCCGCAGCCGAGACTGAATTCTTTTGTGACATCTGCATCAGGTCATTCAAAAGCCGTCAAGCTTACTCTAACCACATGCGCATCCACGCCAAAGTGCCGACCACTAACAGGAAACCTGGCGAGCCTAAAGGTTTCGCTCCACAAATCATTGGCAAGCCTATCCGCCAGTTCCCTATGATCCAACCGGGCTTGGTCTCATTCAAGCCCAATTGTAATGTTCCTAATGCTCCATATTCGTGTGACATTTGTGGAAAAGGTTTCATGCATAAGAAGAATATATGGAAACATAAGAAGGTGTTGCATGCCGACCTCCTGAATGAACGTAATGACAGTGAAGACAACACCATGCAGGCATCTACCGAAGAAGATGAATATAATGTTGACGAAAACGGCACTGCATTGTCAACACCACAGTTCAACAGTTTTAATTTCTCGAACTTTGCTAATAATGTGCAGCAACAACAACAACAACAACAACAACAACTACAACAGCAGCAGCAATCGACGCCAACAAATGACGCCTTGCCATTCTCCTGCGAACTTTGTTTCAAACGGTTTCCGCTTAGAACGAGTTTGTGGAAACACAAACGCGCCAAACACGGTATCATTAACGCGAGCGCAACCGGCAATCCCGAGAATCAAGCACAGCCTTCTTCGGAAGGTGGTAGGTCTAGTTGCACAATTTGCAAGATTACATTCTCGGATAAAAAGTCGTACTATCGCCATAGGAAAAACGTGCACAAATCCACTGCACAAATGTGTAAGATTTGCGGTAAACCATTAAACTCTACTTTGGAATTGTATGAGCACTTGAAGGCTGCTCATGCCCGGGAACTACTGGGATACAATGCTAATCAAGGCACAAGTAAAACACAAGAGGACGTGAAAATAGAATATGAACCCGAACCTGAAATCAATGATCCGAGCGCTGAATATCAAGCGCGTTACCCGTGTGATACTTGTGGTAAGCAATTCGTAGGACTTCTGTCGTTGCAGAACCATCAATGTATAAACCAAACTACTTCAGAGCCTCAAACTTTCGACTGCGAAATATGCCACAAGAGCTATACTTCGATAGCAGCGTTGAAGAGCCATCGCGGCTGGCATTTGCGCTCTCCTGACGGTAAGGCTGCTGCGAACAACAGCGGCTTATGGATGCCGCAGCACAAAGTAACCAGCAAAGTCAGTAAGCATGAAGTCGTAGATGCCTCACAACTTGCGAGAGTCACCCACTCCACCCCCACAGCAACCACTACTACAACTTCTAACAAACGGCGGCTACCACCAGAAGTAGAGGTAACCGTCGTCAACCCTAACAAGAAAATGAGATCAGACGATTCTATGGAACTCGAACAGCAGAATAGTTTAACCGGAACTCTAGAAGATCGTTATTGCACTATCTGCGACAAAGAATTCACCAAACGGGCGGCTTACCAGCGCCATATGGATGAAGTGCACCAGCCGAATTCTGTGTTTTGCCCGGTGTGCGATAAGAGCTTCACTCGCAAATCGACTCTGCTCGTCCATATGAAAAAGCATTACGGTGGCGACGGGGAAGGAAGTTCGAGCGCGATGGGTCAAACCGTTGAGGAAGATATGTTCGGGTGCGACCAGTGCGGGACTCAGTACAACAACGAGGCTGCGTTACGAGCGCATCGAGCGCGGCACCACGGGGAGGACTCTAACGAGTCCGAAGACGATGGCAACGTACCAATAGCCCAGCCCGGAGAGTTTACCTGCGGCCAGTGCGGGGACGGCGTCGCCACACCGCGCGACCTTATCGCCCACCGATCCATGCACGCAACACCGACCAAATTCTTCTGCAACATTTGCAAAGTTTACTTCGCACGCGCTCTGGATCTCTCATCTCACACTCGGGCGAGGCATTCCGACAACGAAAAAGTATTCTTCCCTTGTGCCATGTGTGACCGCTTCTACATGAACAAGAAAAGTTTACAACGACACATTGATGTGTCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGEILPIFPTTSSDDSEPHVLASKIKDCVAIQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEELNIKSEPLSDEAYDDGVVIDGAYREEAAGTSKVQPEGPPILASLGLTPRSDKNYVDPRMDWHRVLAILDMVQDDDVINSLQSAEECDILLQSDHDSDSDIELECDLDDAYIDCKNGYKSRDHKIISKRPLISGAENYPKVRDAMTLRKRSGREYKPCPQPKHAWELIFTNDLLELIVTATNENITKNGRSFSCGTNTSEIKTLIGILYFHGIMRSTHQKLKDLWHVQYGLTCIKNAMKFERVKFLLENLYFYNDDDENLMQFDIMKQMRTVLEIFTLNCRSAYHIEDIAVIDEILVPVFGPAPFRFDIENKALKSGIKMVLLVDPKNFYISNLDIITDSYFRADEIVSKLVQHLAGTGRVIVMDNWFSSYTLIEKLKHEYKLFCLVALKQKDEIIPPFFLSQDRMAKPVLVGYLVDGYTLTSQMISKTKSVNVLTNDPKFNKKGLFKKSSAATEYKRNQSAVEVVDVLMHYYTTMQYTNSWMMSLFFSLLNIASVNAQVIWSTYNRQDVVKRRLFIQELALSLMKTDASFPMSPINQALLKCSSKGVESEKDEEEDEDDEMIEPAQQYNKVASMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHGFDRYTNKINTKKTKTHMQPKLRLNPFNPKARLMPNPISHKLQFQKPMPNRIMPSRIVAPPKPIPIKTSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEYLVSEPAIINSGPESPETLISEPEIASFQVETILSEPGLDQNNEEEEEVDESQNQNQHYDTVDMESDHEIEIARQKENDGEMDENQAEHDEDEMQHDNENMDNTEGEMSDNENGHQEEDEEQGESQGDMIIEEHNEAQGEDGEGENDEDNGDRDEDQDGNEENENDEDEDLPPGLAPVVEINEDLQTNSYNSEQNEEEEEELDESAANDNIDEDVKELDPDKVYVTKTQRDFIQKYRDIIQQINTKRCLCCDRDHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVMEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCTEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDKPHYCQHCDAKFEQTPDLNKHIYAQHSDKVMGAQPMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAYAAAETEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSNFANNVQQQQQQQQQQLQQQQQSTPTNDALPFSCELCFKRFPLRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKTQEDVKIEYEPEPEINDPSAEYQARYPCDTCGKQFVGLLSLQNHQCINQTTSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVTHSTPTATTTTTSNKRRLPPEVEVTVVNPNKKMRSDDSMELEQQNSLTGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAMGQTVEEDMFGCDQCGTQYNNEAALRAHRARHHGEDSNESEDDGNVPIAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIDVSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01135995;
90% Identity: iTF_01135995;
80% Identity: -