Acra018235.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
-
Assembly
GCA_947859365.1
Location
OX402061.1:10304747-10318665[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0001 0.0071 17.4 0.1 3 23 129 149 128 149 0.97
2 16 9.5e-07 6.4e-05 23.8 1.2 1 23 155 177 155 177 0.99
3 16 5.9e-06 0.0004 21.3 2.7 1 23 183 205 183 205 0.99
4 16 2.2e-05 0.0015 19.5 1.3 1 23 220 242 220 242 0.98
5 16 0.00012 0.008 17.2 0.7 1 23 257 279 257 279 0.98
6 16 6.4e-05 0.0043 18.0 0.0 1 23 286 308 286 308 0.99
7 16 1.2e-05 0.00079 20.3 2.1 1 23 314 336 314 336 0.99
8 16 0.038 2.6 9.3 1.8 1 23 343 365 343 365 0.98
9 16 6.4e-07 4.3e-05 24.3 2.3 1 23 371 393 371 393 0.99
10 16 0.16 11 7.4 1.8 1 23 400 422 400 422 0.98
11 16 2.6e-06 0.00018 22.4 1.5 1 23 428 450 428 450 0.99
12 16 0.00049 0.033 15.2 0.7 1 23 457 479 457 479 0.99
13 16 2.9e-06 0.00019 22.3 1.9 1 23 485 507 485 507 0.98
14 16 0.0021 0.14 13.3 0.3 1 20 513 532 513 535 0.93
15 16 4e-05 0.0027 18.7 1.4 2 23 542 563 541 563 0.96
16 16 3.7e-06 0.00025 21.9 1.4 1 23 569 592 569 592 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCTATGAGTTTCTACACATCCCACGCCCACGTCCACCCCGGCCCGCCCACAATAGTCCGCTCCGATTCAAACCATGCCATCATCAACATGAACCAACACCATCCCGAGGACTCGAAGGACAGCCTCATAGTGCAGCAACAAGTGCAACATCAGCAGGATCTGATGGAACAGCACCAGCAACAGGAGATGCAACAAGATGATGAGTTAAGCTTTAAAGGAATGGATGATGAAGGTGTTGAAATGGATATGGATGGACGCCAATGCTCTCAGGGCATGGGCGTTGATATGGGATCAGTTCAAACCAAAATGGAGATATCTAATGGAGGCCAGTCGACACCACGTTCCAAACCGCAAGCCTGTAAGGTTTGCGGTAAAGTATTGTCGTCCGCTTCGTCGTACTACGTCCATATGAAGCTTCACTCCGGAAACAAACCCTTTCAGTGCACGGTTTGCGACgcagctttctgccgcaagccgtacctggaagttcacatgcgaacgcatacgggcgaaagaccctttcaatgcgacctgtgcctcaaacggttcacacagaaatcgagccttaatacgcacaaacgcgtccacaccgatgagcacatgcgcgccttgatggtgaaggagcggccctacaagtgtgagctctgtgccgtcaggttcacgcagagctccagcctcaaccgccacaagaaaatacacacggAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTGAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGGAAAATCCATACCGtgcaagggcgcccttacacgtgcgggctctgccccgcggcgttcgcccgccgcccctacctggacattcacatgcgcacgcacacaggcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcactcagTCCAGGGCAgaccgttccagtgcctgtcgtgccccgccgccttcacgtgcaagcagtacctggagatacacacgcgcacgcacaccggcgagcgcccctatcagtgcgacatctgtctcaagcgcttcacgcagaaatccagtctcaacatccacaagcggacgcactcagtgcagggccgccccttccagtgcctgtcgtgccccgccgccttcacctgcaagcagtatctggagatccacaaccgcacgcacaccggcgagcgcccctaccagtgcgacgtctgcctcaaacggttcgcgcaaaagtccacactcaacatccacaaacgaacgcacacagtgcaaggtcggccgtatcagtgcatggagtgtccggcggcgttcacttgcaagccgtatctggagatacacatgcgcacgcatacaggcgagagacctttcgagtgcgatgtctgttacaagcgcttcacgcagaaatcgacgctcaacattcacaagcgaatacacaccgGAGAACGGCCATATGCCTGTGATATTTGTCAGAAACGATTCGCCGTTAAGAGCTACGTAACAGCGCACAGGTGGTCGCACGTAGCCGACAAGCCTTTGAACTGCGACCGCTGCTCGATGACATTCACGTCCAAGTCCCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGCTCGTGCTACGAGTGCAGCGTCTGCGGCCGAACTTTCGTACGCGATAGCTACCTAATACGACATCACAACCGCGTGCACCGTGAGAATCACAGCAACGTGTCCGCAAATAGCATCGGCACCATCAACAGTGTCGCGACCAACACTAACAACTCCAACAATAGCAACTACGACTCGCCTGGCGTTTGTGACTTAAGTTTTGTACCCATGGTCAATCGTTACATGACCTCGCAAGGGACACAGGTCTCCATGCAAGACACGCAAAGTAAGATGTCGGCAATGTCCCCGCAGTCTATCGCGTCGATTTCGTCGCCGCCGCCGCCACATACGCCCACTCCGCAGCCTCAGATGTCGGGTCAGATGCATCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHPGPPTIVRSDSNHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMEQHQQQEMQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEISNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCAVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTVQGRPYTCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
-
80% Identity
-