Adep028240.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759220.1:7676350-7688204[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.037 1.7e+02 3.8 0.0 39 53 120 134 108 135 0.87 2 7 0.13 6.1e+02 2.1 0.2 18 44 190 216 179 221 0.84 3 7 0.0006 2.7 9.6 0.4 21 45 221 245 217 248 0.90 4 7 0.0099 45 5.7 0.0 21 44 249 272 246 276 0.89 5 7 5.1e-05 0.23 13.0 0.1 21 48 277 304 273 308 0.85 6 7 0.0028 13 7.4 1.0 22 45 306 329 300 336 0.84 7 7 0.011 49 5.6 0.8 21 44 333 356 329 361 0.90
Sequence Information
- Coding Sequence
- ATGGTAACATGGATCGATGCCAAATCCCATCTGCCCGTCAAACGACATTCCACCGACTTTCGTCTTCACAGTTCGTGTGCGACTCTGACTCCTATCAAATCAGAGTCAACAGATGCTCGTCTCCGGAACCATGCTTCACCAGAAGACTACCGACCTCGACTGGTGTCCGACTTCCGCCTGGGAGGCCCCGGGTGGCTACCGCATGGCCTTCCCTCCACCAGCTTCTACGAGGAAGACAGGAAGTTCCGTGTCAAGGAGGAAACAGAGCTCATCATCGAGTGCACTCCGACCATCCTCCACGaTGATGTCGTTGACTGGGAATGTTACTACTGTGGATGGACCTCTTACAGCTTGGGCAAACTTCGGAGGCACATTGTACGTAGGCACATGAAGAAGTACGGAACTACAGGCCAGAAGAGATCGGCCCCAGCCGGCCGCTCCAAGAATAACCATGTAAACATTTCAGAGCAATTGGTCTACCAACATGGTGCTCTGAACAGTCATATGGCGATACACCCTGGAGAAGCCCCGTTACAGCATTCGGAGGATAGTTATGAAAGTATGGTGAGAGAGGCGGTGGAGAAGCCATTTCCTTGTTCAGTGTGCAGTTACAGATGTCGAGAATTTAATACTCTGAAGGTGCATATGTTGAAACACACAGgcgagaaacctttccaatgtccAATGTGTGACTATAGATGTAGACATTCTGGTCATTTGAGGAGTCATATGGTAATACACTCTGAGGAAAAACCTTTTCAGTGTACAATATGTAATTATAGAGGTCGACATTCGGGCAATTTCAAAACGCATATGTTGACACACTCAGAGGAGAAACCATACATTTGTTCAATATGTGGGTACAAGTGTCGTCAGTCCGGAGACTTGAGAAGTCATATGATGATCCATACGGAacagaaacctttccaatgcaCTGTCTGTCACTATAAATGCAGGCGGCTCAACAATCTGAGGGTGCATCTCATGACGCACACTGGGGAGAAACCTTACCAATGTCAAATATGCAATTATAAATGTCGATACTCCAACTCTTTGAAGACACACATGTACTGTCACAAAGTGGAGATAGGGCCTGTCGAATAG
- Protein Sequence
- MVTWIDAKSHLPVKRHSTDFRLHSSCATLTPIKSESTDARLRNHASPEDYRPRLVSDFRLGGPGWLPHGLPSTSFYEEDRKFRVKEETELIIECTPTILHDDVVDWECYYCGWTSYSLGKLRRHIVRRHMKKYGTTGQKRSAPAGRSKNNHVNISEQLVYQHGALNSHMAIHPGEAPLQHSEDSYESMVREAVEKPFPCSVCSYRCREFNTLKVHMLKHTGEKPFQCPMCDYRCRHSGHLRSHMVIHSEEKPFQCTICNYRGRHSGNFKTHMLTHSEEKPYICSICGYKCRQSGDLRSHMMIHTEQKPFQCTVCHYKCRRLNNLRVHLMTHTGEKPYQCQICNYKCRYSNSLKTHMYCHKVEIGPVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154776;
- 90% Identity
- iTF_00154776;
- 80% Identity
- iTF_00154776;