Adep026665.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759219.1:37336232-37359440[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.16 7.1e+02 1.9 0.2 26 44 156 174 149 179 0.88 2 10 0.66 3e+03 -0.1 0.0 22 48 180 206 177 213 0.86 3 10 0.91 4.1e+03 -0.6 0.1 18 44 233 259 224 267 0.79 4 10 2.1e-05 0.093 14.3 0.8 23 47 266 290 262 296 0.88 5 10 0.0091 41 5.8 0.1 21 46 320 345 316 348 0.88 6 10 0.00052 2.4 9.8 0.3 22 50 349 377 346 380 0.92 7 10 0.00037 1.7 10.3 0.5 11 44 451 484 443 492 0.88 8 10 0.056 2.5e+02 3.3 0.1 23 46 491 514 485 524 0.85 9 10 0.00032 1.4 10.5 0.3 26 52 533 559 528 560 0.84 10 10 3.4 1.5e+04 -2.4 0.4 7 19 582 594 576 601 0.70
Sequence Information
- Coding Sequence
- ATGGATGCTATGTTTCAACTGCATCAGTATATTCAAACACCTGATCAGatcaattttgatgaaatttgcCGTTTGTGTGGTTCGTCGAAGGGTGTAATGAGTTACATATTCAGCTCAACAGGAGTTGATACTTCAGTGCCGCTGTCAACCCGGATAATGAATTTTGCTAATATTcagATAACAGAAGGGGATGGGCTGCCCTCGTTGGTCTGTCATCGATGTCTCTACCATGTGGAGAAGGTGAACGAATTCAAACAGCTCTGCGAACAGTCCGATGCACTTCTTCGCCAGTACCTCGCTGTTCAGACGGAAGCAGAGAAGAGGATGTCCAATAAAAAATTCTTCAAGACTGAATGTAACGGAGTTGAATTTGGTATAAAGCAAGAACCTGGAGAGGAAGACAAGGGAACTAACACTCTGGAGGACACGGAGGATCTGTAtGAAACTGATGAGGATAGCGAATTCAACTGTCCCAACTGTAATAAGCACTTTGACTGTTCCGAAAATCTGAACAGGCACGCTCTTATTCACACTCAGGAAGGCCCTTTCCCATGCGACTATTGCAGTCTAGTGGAGAAGGACAAAGCATCGCTGCGAACCCACTGGCGGACGGAACACGCAGGCTCCAATCCACACGTGTGTCAGACTTGCGGCGAGTCGTTTGGTGCACGCGAGGGCCTGACGAGGCACAACGAGCGACACGACCGAGTAAAGCCCTACCACTGCACCGTCTGCGGCAAGGCGTTCTCGTATAAGTCTGACCTCAGAAAGCACGCTATTATACATTCAGGTGTTCGGCCGTACGTGTGTCCGATCTGCTACAAATCCTTCACCCGGAGCACCAACCTGAACAAGCATTGTCGACTGCACACCGGCCGCCGGCCCTTCCCCTGTGGTGGCTGTAACAAGATGTTTGCTTCTCGAGGGGACCTTGTTCGTCACTCCGTCATACACACTGGAGAGAAGCCCTACACTTGTACCGTATGTCACATCTCATTCAACAGAAAGGACAAGTTATCAAGGCATGAGAAGCTGCATATCGGGGAGCGACCTCACACTTGCACCGTTTGTCCCACCTCGTTCAACCGGAAAGAGGAACTTACGAAACATGTGCAGTTTCATCATTTCACACCCGAGGGAGACCTTGATGACGACTCAGTGGTGGCTGAGGACCTCTCCGGTTTCAGCAAGAAGTCTAACTTTCATGCTGAAGATGGAGGTGGAGATGAAGGAGGAGGTTCAGAAACAGAAGACGTTGTGATCAGTGTGGACCCTTCTTCATGGGCTGGAGACAACAGTCAGAGCAGCAGTCAGAGTGGAGGGGAGGCCAACAGCAGCTCCAGCATTGGAGGCGGCGAGCCCCCTGCTGTCTCCTGCCAGGAGAGGAGGGACTTTGTGTGTACCATCTGTATGAAGGGGTTCAGACAACGACGAGAGCTGGTTCGTCACTCCACCGTCCATACAGGCTACCGGCCCCATCCCTGCAACATCTGTGGCAAGGCCTTCGCCAGAACAGACAAACTGAAGCGTCACCTTCGGAcccacacctcctccaagaagAAGAAAGGTGTACCTGCGGTGACACTGCCACGGCCCCAGTGTGAGATCTGCTTTAAGGTGTTGTCCTCGAAGCACGAACTGCGCCGCCATCTTCTCACCCACTCTCTGTACAAGCCGTACCAGTGCAGTCTCTGCTCCTCCTCCTACTGTCGAAAGGACAAACTGGTGAAACACATCAAGAGGATCCATCCTCCCTCATCCAACACACCCACACCCAGTAGTGACACCTCCTCAGTCACACCCCATCTACCTCACAGTTTAAGTGACACACTCTGGAAGCTACATGCTGAACTAATTAGAAAAGTGACGTCTTCTAACAATGGAGGACTGCCTTTAGTCAACAATATCGCCGCTTGA
- Protein Sequence
- MDAMFQLHQYIQTPDQINFDEICRLCGSSKGVMSYIFSSTGVDTSVPLSTRIMNFANIQITEGDGLPSLVCHRCLYHVEKVNEFKQLCEQSDALLRQYLAVQTEAEKRMSNKKFFKTECNGVEFGIKQEPGEEDKGTNTLEDTEDLYETDEDSEFNCPNCNKHFDCSENLNRHALIHTQEGPFPCDYCSLVEKDKASLRTHWRTEHAGSNPHVCQTCGESFGAREGLTRHNERHDRVKPYHCTVCGKAFSYKSDLRKHAIIHSGVRPYVCPICYKSFTRSTNLNKHCRLHTGRRPFPCGGCNKMFASRGDLVRHSVIHTGEKPYTCTVCHISFNRKDKLSRHEKLHIGERPHTCTVCPTSFNRKEELTKHVQFHHFTPEGDLDDDSVVAEDLSGFSKKSNFHAEDGGGDEGGGSETEDVVISVDPSSWAGDNSQSSSQSGGEANSSSSIGGGEPPAVSCQERRDFVCTICMKGFRQRRELVRHSTVHTGYRPHPCNICGKAFARTDKLKRHLRTHTSSKKKKGVPAVTLPRPQCEICFKVLSSKHELRRHLLTHSLYKPYQCSLCSSSYCRKDKLVKHIKRIHPPSSNTPTPSSDTSSVTPHLPHSLSDTLWKLHAELIRKVTSSNNGGLPLVNNIAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154695;
- 90% Identity
- iTF_00154695;
- 80% Identity
- iTF_00154695;