Adep006996.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759214.1:100231853-100233085[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.32 1.4e+03 0.9 0.2 39 49 15 25 3 27 0.83 2 12 0.00045 2 10.0 0.6 20 44 49 73 43 78 0.87 3 12 0.086 3.9e+02 2.7 0.0 21 52 78 109 75 110 0.88 4 12 0.2 9.1e+02 1.5 0.1 22 44 135 157 131 162 0.88 5 12 0.0013 5.8 8.5 1.3 21 44 162 185 158 193 0.87 6 12 0.041 1.9e+02 3.7 0.0 22 43 191 212 187 216 0.91 7 12 0.018 80 4.9 0.3 21 44 218 241 214 249 0.86 8 12 0.18 8.1e+02 1.7 0.1 21 44 246 269 243 274 0.87 9 12 0.0025 11 7.6 0.2 21 44 274 297 270 301 0.90 10 12 0.00016 0.71 11.5 0.4 21 45 302 326 299 333 0.86 11 12 0.03 1.4e+02 4.2 0.2 21 44 330 353 327 358 0.89 12 12 0.00011 0.48 12.0 0.2 21 44 358 381 354 386 0.91
Sequence Information
- Coding Sequence
- ATGGGATGTTACTACTGTGGCCACACCTCTGTCAGCTTGGGCAGACTTCGGAGACATATTGTATGTCGTCACGTTAATGTCGTTCATCTACAACTAAGTGAGCGTCCTTCGTTCGTCTCCGACTCCTGGAAGAGGCCAATTCAAGCCTCCGTGAAACCATTCCAATGTACAGTGTGCAGTGCTGGTTGTAGAGACTCTTGCAATTTGAAGAGGCAAATGTTGACTCACACTGAAGAGAAACCGCCCCAGTGTCCTGTGCCCGATTACAGTAGCCAATGGTCAGGCTACTTGAAGAGGCATGAGTTGACTCGAACTGAGGCGAAACCGTTGCAGGGTAATGTGGGTAGTTATAGTGTTCGGCCCTCTGTGTATATTAGGAAGTACACGTTGACTCCCACTGACGAGGAACCGTTCCAGTGTACAGTGTGCGGTTATAGATGTCGGTACTTTGGTAACATTAAAAAGCATATCTTGACGCATGCCGAGGAGAAACCGTTTCAGTGTAAAATTTGCAGCTATAGATGTGCAAAATCATGCAATTTGAAGAGACACATTTTGACACACATTGAGGAGAAACCGTTTGAGTGTACATTGTGTAGTTATAGTTCCCGATGGTCGGGTCATTTAAAGAGGCATAAGTTGTCTCACACTGAAGAGAAACCATTCCAGTGTACACTGTGTAGTTATAGATGTCGGCAGTCAGGCTATATGAAGAGTCACATGTTGACTCACACTGAGGAGAAACCGTTTGAGTGCTCAGTCTGCGATTATAAATGTCGGCACTCTGGCTATATGAAGAGTCATATGTTGACTCACACTGAGGAGAAACCGTTCCAGTGCTCAGTCTGCAGTTATAGATGTCGGCAGTCTGGCGATATTAAGAAACATATGTTGACTCACACTGAAGAGCAACCGTTCCAGTGCTCAGTGTGCAGTTTCAGATGTCGGCGCTCTGGcgatttgaagaggcatatgttgactCACACTCAggagaaaccgttccaatgtacAGTCTGCAGTTATAGATGTGTTCAGTCCGGTGCTTTGAAGAGTCATCTACTGACCCACACTGATGAGAAACCGTTTCAATGTACAGTGTGCAATTACAAATGTCGGAAGTCGGGGAATTTGAAGAGGCACATTTTGACTCACACGGAGGAGGAACTGTTCCAGTGTACATTGCAAAATTATAGCTGTCTGCAGTTTGATGCAATGTTTGTTGATTCAAACTGA
- Protein Sequence
- MGCYYCGHTSVSLGRLRRHIVCRHVNVVHLQLSERPSFVSDSWKRPIQASVKPFQCTVCSAGCRDSCNLKRQMLTHTEEKPPQCPVPDYSSQWSGYLKRHELTRTEAKPLQGNVGSYSVRPSVYIRKYTLTPTDEEPFQCTVCGYRCRYFGNIKKHILTHAEEKPFQCKICSYRCAKSCNLKRHILTHIEEKPFECTLCSYSSRWSGHLKRHKLSHTEEKPFQCTLCSYRCRQSGYMKSHMLTHTEEKPFECSVCDYKCRHSGYMKSHMLTHTEEKPFQCSVCSYRCRQSGDIKKHMLTHTEEQPFQCSVCSFRCRRSGDLKRHMLTHTQEKPFQCTVCSYRCVQSGALKSHLLTHTDEKPFQCTVCNYKCRKSGNLKRHILTHTEEELFQCTLQNYSCLQFDAMFVDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154739;
- 90% Identity
- iTF_00154739;
- 80% Identity
- iTF_00154739;