Adep007004.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759214.1:100267474-100273742[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.77 3.5e+03 -0.4 0.0 20 46 150 176 143 182 0.67 2 10 0.0051 23 6.6 0.2 21 45 179 203 176 210 0.86 3 10 0.016 73 5.0 0.6 23 44 209 230 204 234 0.88 4 10 0.0015 6.9 8.3 0.3 21 43 235 257 232 262 0.90 5 10 1.8e-05 0.081 14.5 0.1 21 44 263 286 260 294 0.85 6 10 0.21 9.5e+02 1.4 0.2 22 44 292 314 288 318 0.79 7 10 0.0002 0.9 11.1 0.1 21 44 319 342 316 347 0.91 8 10 0.0042 19 6.9 0.4 21 44 347 370 343 374 0.92 9 10 0.0043 19 6.9 0.1 21 47 375 401 372 407 0.86 10 10 0.11 4.9e+02 2.4 0.1 22 44 404 426 401 431 0.88
Sequence Information
- Coding Sequence
- ATGGAGACGAAACATCACACAGGTGTGACCTCTACAGCTGTTATCAAGACAGAACCAACAGATGTCTTCTACCTGGATCATCCTACAGACCACGTAGAAGTGAAGGAGCCGGGGGTCCACCTGGAAGACATGCCCTCGACTAGTTCCTGTGTGACCTCTACAGCTGTTATCAAGACAGAACCAACAGATGTCTTCTACCTGGATCATCCTACAGACCACGTAGAAGTGAAGGAGCCGGGGGTCCACCTGGAAGACATGCCCTCGACTAGTTCCTGTGATATAATTGACCCGGTGAAGATGGCATGTTACTATTGTGGCCACACCTCTGACAGCTTGGGCAGATTTCGGAGACATATTGTATGTTGTCACGTTAATGTCTTTCATCCACTACTTTCTGGACGTCTGAGGTATGATTCAGCCTCCTGGAAGAGTCATGAATCGAGTGATACAGATGAGAAACCGTTCAAGTGTACAAATTGTAGCTATAACTGTTTCTATCTTAGCAAGCTGAAGAGAcacatgttgatacattcgaaGGAGAAACCATTCGAGTGTACAGAGTGCAGTTTTAGATGTAGGCAGTCTGGCGATATTAAGAGGCATATCATGACACACACCCAGctgaaaccgttccaatgtacAGAATGTAGTTATAGATGTCGACAGTCTGGCGAACTGAAGAGGCATATATTGACTCACACTGAtgagaaaccgttccaatgtaaAGTGTGTAGTTTTAGATGTCGGCAGTCAGGTGTATTGAAAAGGCATTCATTGACTCATACTGAGGAGAAACCGTTTCAGTGCGCAATATGCAGTTATACATATCGACAATCTGGCGAtctgaagaggcatatgttgactCACTCTGACAAGAAACCGTTTCAATGTTCTATGTGCAGTTATAGTTGTGTAAAATCTAGCAGTATGAAGAGGCACATATATACTCACACTGACGAGAAACCGTTCCAGTGTACTTTGTGCAGTTATAGTTGTCGAGACTCTGGCAACTTGAAGAGACATATGATGACTCACACTGATGAGAAACCCTTACAATGTTCAGTGTGTAGCTATAGTTGTCGAGATCCTAGCAATATGAAGAGGCACATATTTACTCACACTGAtgagaaaccgttccaatgtacATTGTGCCTTTATAGTTGTCGAGAAACTGGCAAATTGAAGAGACATATGCTGATTCACACTGATGATAAGCCGTTCCAGTGTACTGTGTGCAGTTATAGTTGTCGGCAGTTTGGCCTTTTGAAGAAACATATGTTATATCACACTGAGCAGAAACTCTAG
- Protein Sequence
- METKHHTGVTSTAVIKTEPTDVFYLDHPTDHVEVKEPGVHLEDMPSTSSCVTSTAVIKTEPTDVFYLDHPTDHVEVKEPGVHLEDMPSTSSCDIIDPVKMACYYCGHTSDSLGRFRRHIVCCHVNVFHPLLSGRLRYDSASWKSHESSDTDEKPFKCTNCSYNCFYLSKLKRHMLIHSKEKPFECTECSFRCRQSGDIKRHIMTHTQLKPFQCTECSYRCRQSGELKRHILTHTDEKPFQCKVCSFRCRQSGVLKRHSLTHTEEKPFQCAICSYTYRQSGDLKRHMLTHSDKKPFQCSMCSYSCVKSSSMKRHIYTHTDEKPFQCTLCSYSCRDSGNLKRHMMTHTDEKPLQCSVCSYSCRDPSNMKRHIFTHTDEKPFQCTLCLYSCRETGKLKRHMLIHTDDKPFQCTVCSYSCRQFGLLKKHMLYHTEQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154717;
- 90% Identity
- iTF_00154717;
- 80% Identity
- iTF_00154717;