Adep007002.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759214.1:100257951-100262447[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.22 9.8e+02 1.4 0.2 39 49 90 100 76 103 0.79 2 11 0.69 3.1e+03 -0.2 0.2 19 44 125 150 119 158 0.78 3 11 0.13 6e+02 2.1 0.0 23 44 157 178 152 182 0.86 4 11 0.00044 2 10.0 0.4 21 44 183 206 180 210 0.91 5 11 0.0011 4.8 8.8 0.3 21 44 211 234 208 238 0.91 6 11 0.00036 1.6 10.3 0.9 21 44 239 262 235 271 0.86 7 11 1.2 5.4e+03 -1.0 0.1 23 44 269 290 267 298 0.82 8 11 0.0011 5.1 8.7 1.2 22 44 296 318 277 322 0.83 9 11 0.00066 3 9.5 0.2 21 46 323 348 319 354 0.86 10 11 0.0016 7.1 8.3 0.5 22 44 352 374 348 379 0.90 11 11 2.2e-05 0.1 14.2 0.2 21 46 379 404 375 408 0.90
Sequence Information
- Coding Sequence
- ATGAGCTGGAGGGCCGGCTGTTGCTTGGCACGTGCCAGCAGGGACGACAACCACCACGAAGATGGGAAGGTTAACGTTAAAGAGGAGCCGGGGATCCACCTGGAAGACATGCCCTCAACTAGTTCCTATTACCCAGAATGGAAAGTCCGGATCAAAGAAGAGCCCGAGCTGTTCATACAAGATGTCCCAGCTAACTTCCAGGGTGACATAATTTACAAGGTAAAGATCGCATGTTACTACTGTGGCCACACTTCTGTCAGCTTGGGCAGACTTCGGAGACATATTGTATATCGTCACGTTAATGTCGTCCATCCACAACTTTGTGAAGACACTTCGTACGTCTCAGACTCCTGGATGAAGCGTGAATCGAGTAACACAGACGAAAAACAGTTTAAGTGTACAAACTGTAGATATAGCTGTCACTTTTCTAGTAAGCTGAAGAGACACATGTTGACACATACGAAAGAAAAACGATTCAAGTGTACAGTGTGCAGTTTTAAATTTCGTGAGTCTGGTAGTTTGAAAAATCATTTGTTGACTCACACCAAtgagaaaccgttccaatgtacAGTGTGTAGTTATAGATGTCGACAGTCTGGGGATCTGACAAGACATATGTTGACTCACACTGAtgagaaaccgttccaatgtatAGTGTGCAGATTTAGATGTCGGCAATCAGGTGAtatgaagaggcatatgttgactCACACTGAGGAGAAGCCGTTCCAGTGTACAATATGCAGTTTTAGATGTCGGCAGTCTTGTAgtttgaagaagcatatgttgacTCACACCGATATTAAACCGTTCCAGTGTTCAGTGTGCAGCTATAGATGTAGGGAGCCCAGCAGTTTAAAGAGTCATATGATGTCTCACACTGATAAGAAACCCTTCCAATGTACAGTGTGCAGTTATAGTTGTCGAGAGTCAAGTAACATGAAGAGGCACATAGTTACTCACACTGACgagaaaccattccaatgtaCAGTGTGCCGTTATAGTTGTCGAGAATCTGGCAAATTGAAGAGACATATGTTGATTCACACTGATGATAAGCCGTTCCAATGTACAGTGTGTAGTTACAGATGTCGAGTGTCTGGcaatttgaagaggcatatgttgactCACACTGAGGAGgaaccgttccaatgttcagTGTGTAGTTATAGATCTCGGCAGTCTGGCAATATGAAGAGACATTTGTTGCTTCATTCTGACAAAGAAGCATAG
- Protein Sequence
- MSWRAGCCLARASRDDNHHEDGKVNVKEEPGIHLEDMPSTSSYYPEWKVRIKEEPELFIQDVPANFQGDIIYKVKIACYYCGHTSVSLGRLRRHIVYRHVNVVHPQLCEDTSYVSDSWMKRESSNTDEKQFKCTNCRYSCHFSSKLKRHMLTHTKEKRFKCTVCSFKFRESGSLKNHLLTHTNEKPFQCTVCSYRCRQSGDLTRHMLTHTDEKPFQCIVCRFRCRQSGDMKRHMLTHTEEKPFQCTICSFRCRQSCSLKKHMLTHTDIKPFQCSVCSYRCREPSSLKSHMMSHTDKKPFQCTVCSYSCRESSNMKRHIVTHTDEKPFQCTVCRYSCRESGKLKRHMLIHTDDKPFQCTVCSYRCRVSGNLKRHMLTHTEEEPFQCSVCSYRSRQSGNMKRHLLLHSDKEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154721;
- 90% Identity
- iTF_00154721;
- 80% Identity
- iTF_00154721;