Adep019949.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:54148364-54156714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.048 8.3 8.5 1.0 2 23 33 55 32 55 0.96 2 22 1.4 2.5e+02 3.8 0.2 2 17 64 79 63 80 0.90 3 22 0.0098 1.7 10.7 5.7 2 23 93 115 92 115 0.96 4 22 3.9 6.8e+02 2.5 7.7 2 23 122 144 121 144 0.92 5 22 0.00092 0.16 13.9 5.0 1 23 150 173 150 173 0.96 6 22 0.012 2.1 10.4 8.4 2 23 180 202 179 202 0.95 7 22 0.015 2.6 10.1 7.3 2 23 209 231 208 231 0.95 8 22 0.042 7.4 8.7 7.2 2 23 238 260 237 260 0.93 9 22 0.4 69 5.6 4.7 2 23 267 289 266 289 0.95 10 22 0.011 1.9 10.5 7.0 2 23 296 318 295 318 0.94 11 22 0.81 1.4e+02 4.6 8.5 2 23 325 347 324 347 0.93 12 22 0.0049 0.85 11.6 6.1 2 23 354 376 353 376 0.94 13 22 0.81 1.4e+02 4.6 8.5 2 23 383 405 382 405 0.93 14 22 0.0081 1.4 10.9 5.6 2 23 412 434 411 434 0.94 15 22 0.81 1.4e+02 4.6 8.5 2 23 441 463 440 463 0.93 16 22 0.0029 0.51 12.3 8.4 2 23 470 492 469 492 0.96 17 22 0.0022 0.38 12.7 2.6 2 23 499 521 498 521 0.95 18 22 0.0059 1 11.3 4.7 2 23 554 576 553 576 0.96 19 22 0.00049 0.084 14.8 3.4 2 23 612 634 611 634 0.94 20 22 0.14 25 7.0 3.0 2 23 641 663 640 663 0.95 21 22 0.013 2.2 10.3 1.8 2 23 699 721 698 721 0.96 22 22 0.0048 0.84 11.6 5.3 1 23 727 750 727 750 0.98
Sequence Information
- Coding Sequence
- ATGTTTACAGCTGAAGCTGAAACAGTTGGCGTGAAGCAGGAGATTCACATAGAAGACATAACATCATATCCATGTGGTTTGGAGACAGTCGAAGTGGTGTGCTACCATTGTGGACATGGTTCTGTGAGCTTGGCCAGGCTGAGAGGACACATCAGGACCAACCACACCCACACCTCTCCACATCCACTTAGTTGTCGTTATTGTAATCACACAGCTGACCGGAGTTCACATTTAGTACAGCAGATACAGTCCGAACACACCGGTGAGAAGCCACTACAGTGCGACTATTGTACTTACAGATGTGTTCACCGTACGAGtttgaaaattcatttaaaGAGCAAACATAGAAAAGAGACACCAATAAAGTGTTGCCAGTGTACTTATAGTTGTGTTCGGTTTGCGGATTTGAGAAATCACAAACATTTGAAACACACAAAAGAGAAGCCTTATAAGTGCGACCATTGTGATTATAGAAGTAAACGGCATGCAGATTTGAGAAGTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTAAACGGCATAGAGAATTGAGAAGTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTAAACGGCATATAGAATTGAGAAGTCACATACTATACAAACATACCGAAGGGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTAAACGGCATATAGAATTGAGAAGTCACGTACTTTACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTGTTGGGTCTAGGGAGTTGAAATTTCACATACAGTCAAAACATACAAAAGCGAAGCCAATCATGTGCAACCATTGTGATTATAGATGCAAACGGCATACAGAATTGAGAAGTCACATACTTTACAAACATACAGAAGAGAAGCCTTTAAAGTGCAATCATTGCACATATAGATGTGTTGAGCATAAGTCCTTGAGACATCACATATTAGCCAAACATACACAAGAGAAGCCAATCATGTGCAACCATTGTGATTATAGATGTAACCGGCATGCAGAATTGAGAAGTCACATGCTTTACAAACATACCGAAGAGAAGCCTTTAAAATGCAATCATTGCACATATAGATGTGTTGAGCATAAGTCCTTGAGACATCACATATTAGCCAAACATACACAAGAGAAGCCAATCATGTGCAACCATTGTGATTATAGATGTAACCGGCATGCAGAATTGAGAAGTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAATCATTGCACATATAGATGTGTTGAGCATAAGTCCTTGAGACATCACATATTAGCCAAACATACAAAAGAGAAGCCAATCATGTGCAACCATTGTGATTATAGATGCGTTCATCCTTCGAGTTTAAAACATCATTTAAAGAGCAAACATATAAAAGGGGAGCTAATGAAGTGCGACCATTGTGATTATAGATGTGTTGATCTTGCGAGTTTGAAACTACATATAAAGGCCAAACATACAAATGAGAAGCCAATAAAATGTGCTCCTAAATGTATTCCGGCTGCACGATTGAAAGATCACGTATTAGGCAAACATACGAAAGATAAGCCAATTAAGTGCGATCATTGTACTTATAGATGTGTTCGGCTTGCATATTTGAGAAGTCACATGCAGTACAAACATATGAAAGAGAAGCCAATAAAATGCGACCATTGTACTTATAGATGTGTTTCGACTCGACAATTTAACTTTCATGTACTGTCAAAACATTCAAAAGAGAAGCCATTGATGTGCACACATTGTAGTTATAGATGTGTCCAGCGTGAGAATTTGAATCGTCATATAAAGGCCATTCATACAAAGGAGGAGTCCTGGAAGTGTGGCCATTGTGCTTTTAGATGTGTTTCGATCAGTCAGTTGAAAAATCATGTACTGTCAAAACATACGGGAGAGAAGCCATTGATGTGCACACATTGTTGTTATAGATGTGAACAGGATGCCACCTTGAAACATCACATGAAGACCAAACATACAAATGAAGAGTCATGGAAGTGTGGCCATTGTCCTTACAGATGTGCTGCtctttctcttttgaaaagtCATATTTTGTCTAAGCATAGAGTTAAGAAACCATTCAGTTGCTATCATTGTACTTACGTTTCTGTTTCTCGCTGCAATTTAATACGCCATATTCAGACCAAACATATGGCAGAGAGGCCGACTGATGTTGAGATGTACAATATGTCTCCTCTAGTTTGA
- Protein Sequence
- MFTAEAETVGVKQEIHIEDITSYPCGLETVEVVCYHCGHGSVSLARLRGHIRTNHTHTSPHPLSCRYCNHTADRSSHLVQQIQSEHTGEKPLQCDYCTYRCVHRTSLKIHLKSKHRKETPIKCCQCTYSCVRFADLRNHKHLKHTKEKPYKCDHCDYRSKRHADLRSHILYKHTEEKPLKCNHCDYRCKRHRELRSHILYKHTEEKPLKCNHCDYRCKRHIELRSHILYKHTEGKPLKCNHCDYRCKRHIELRSHVLYKHTEEKPLKCNHCDYRCVGSRELKFHIQSKHTKAKPIMCNHCDYRCKRHTELRSHILYKHTEEKPLKCNHCTYRCVEHKSLRHHILAKHTQEKPIMCNHCDYRCNRHAELRSHMLYKHTEEKPLKCNHCTYRCVEHKSLRHHILAKHTQEKPIMCNHCDYRCNRHAELRSHILYKHTEEKPLKCNHCTYRCVEHKSLRHHILAKHTKEKPIMCNHCDYRCVHPSSLKHHLKSKHIKGELMKCDHCDYRCVDLASLKLHIKAKHTNEKPIKCAPKCIPAARLKDHVLGKHTKDKPIKCDHCTYRCVRLAYLRSHMQYKHMKEKPIKCDHCTYRCVSTRQFNFHVLSKHSKEKPLMCTHCSYRCVQRENLNRHIKAIHTKEESWKCGHCAFRCVSISQLKNHVLSKHTGEKPLMCTHCCYRCEQDATLKHHMKTKHTNEESWKCGHCPYRCAALSLLKSHILSKHRVKKPFSCYHCTYVSVSRCNLIRHIQTKHMAERPTDVEMYNMSPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154830;
- 90% Identity
- -
- 80% Identity
- -