Adep019958.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759217.1:54194980-54205277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.049 8.6 8.4 1.0 2 23 141 163 140 163 0.96 2 19 1.5 2.6e+02 3.8 0.2 2 17 172 187 171 188 0.90 3 19 0.01 1.8 10.6 5.7 2 23 201 223 200 223 0.96 4 19 4 7e+02 2.4 7.7 2 23 230 252 229 252 0.92 5 19 0.00095 0.16 13.8 5.0 1 23 258 281 258 281 0.96 6 19 0.0091 1.6 10.8 7.7 2 23 288 310 287 310 0.95 7 19 0.015 2.6 10.1 7.3 2 23 317 339 316 339 0.95 8 19 0.048 8.4 8.5 4.4 2 23 346 368 345 368 0.93 9 19 0.073 13 7.9 5.9 2 23 375 397 374 397 0.95 10 19 0.0023 0.41 12.6 7.4 2 23 404 426 403 426 0.95 11 19 0.014 2.5 10.2 5.6 3 23 434 455 432 455 0.94 12 19 0.83 1.4e+02 4.6 8.5 2 23 462 484 461 484 0.93 13 19 0.003 0.53 12.3 8.4 2 23 491 513 490 513 0.96 14 19 0.0022 0.39 12.7 2.6 2 23 520 542 519 542 0.95 15 19 0.0061 1.1 11.3 4.7 2 23 575 597 574 597 0.96 16 19 0.0005 0.087 14.7 3.4 2 23 633 655 632 655 0.94 17 19 0.15 26 6.9 3.0 2 23 662 684 661 684 0.95 18 19 0.013 2.3 10.3 1.8 2 23 720 742 719 742 0.96 19 19 0.005 0.87 11.6 5.3 1 23 748 771 748 771 0.98
Sequence Information
- Coding Sequence
- ATGAGGTTACTGCGAGAGTTCCAAGATATCTACGCCAAAGGTCCGCAGGCAAACCATCCTGATAGACTTCCGAAAAAGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTTGCAATCACGAGGTAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGTAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGAGGGAGGTAGGAACAGTAGCAATCACGGGGGAGGTGGTTTGGAGACAGTCGAAGTGGTGTGCTACCATTGTGGACATGGTTCTGTGAGCTTGGCCAGGCTGAGAGGACACATCAGGACCAACCACACCCACACCTCTCCACATCCACTTAGTTGTCGTTATTGTAATCACACAGCTGACCGGAGTTCACATTTAGTACAGCAGATACAGTCCGAACAGACCGGTGAGAAGCCACTACAGTGCGACTATTGTACTTACAGATGTGTTCACCGTACGAGtttgaaaattcatttaaaGAGCAAACATAGAAAAGAGACACCAATAAAGTGTTGCCAGTGTACTTATAGTTGTGTTCGGTTTGCGGATTTGAGAAATCACAAACATTTGAAACACACAAAAGAGAAGCCTTATAAGTGCGACCATTGTGATTATAGAAGTAAACGGCATGCAGATTTGAGAAGTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTAAACGGCATAGAGAATTGAGAATTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCACTGTGATTATAGATGTAAACGGCATATAGAATTGAGAAGTCACATACTATACAAACATACCGAAGGGAAGCCTTTAAAGTGCAATCATTGTGATTATAGATGTAAACAGGATATAGAATTGAGAAGTCACGTACTTTACAAACATACCGAAGAGAAGCCTTTAAAGTGCAACCATTGTGATTATAGATGTGTTAGGTCTAGGGAGTTGAAATTTCACATACAGTCAAAACATACAAAAGCGAAGCCAATCATGTGCAACCATTGTGATTATAGATGTAAACGGCATACAGaattgagacgtcacatattaTCCAAACATACACAAGAGAAGCCAATCATTTGCAACCATTGTGATTATAGATGTAAACGGCATATAGAATTGAGAAGTCACATACTATACAAACATACCGAAGAGAAGCCTTTAAAGTGCAATCATTGCACATATAGATGTGTTGAGCATAAGTCCTTGAGACATCACATATTAGCCAAACATACAAAAGAGAAGCCAATCATGTGCAACCATTGTGATTATAGATGCGTTCACCCTTCGAGTTTAAAACATCATTTAAAGAGCAAACATATAAAAGGGGAGCTAATGAAGTGCGACCATTGTGATTATAGATGTGTTGATCTTGCGAGTTTGAAACTACATATAAAGGCTAAACATACAAATGAGAAGCCAATAAAATGTGCTCCTAAATGTATTCCGGCTGCACGATTGAAAGATCACGTATTAGGCAAACATACGAAAGATAAGCCAATTAAGTGCGATCATTGTACTTATAGATGTGTTCGGCTTGCATATTTGAGAAGTCACATGCAGTACAAACATATGAAAGAGAAGCCAATAAAATGCGACCATTGTACTTATAGATGTGTTTCGACTCGACAATTTAACTTTCATGTACTGTCAAAACATTCAAATGAGAAGCCATTGATGTGCACACATTGTAGTTATAGATGTGTCCAGCGTGAGAATTTGAATCGTCATATAAAGGCCATTCATACAAAGGAGGAGTCATGGAAGTGTGGCCATTGTGCTTTTAGATGTGTTTCGATCAGTCAGTTGAAAAATCATGTACTGTCAAAACATACGGAAGAGAAGCCATTGATGTGCACACATTGTTGTTATAGATGTGAACAGGATGCCACCTTGAAACATCACATGAAGACCAAACATACAAATGAGGAGTCATGGAAGTGTGGCCATTGTCCTTACAGATGTGCTGCtctttctcttttgaaaagtCATATTTTGTCTAAGCATAGTGTTAAGAAACCATTCAGTTGCTATCATTGTACTTACGTTTCTGTTTCTCGCTGCAATTTAATACGCCATATTCAGACCAAACATATGGCAGAGAGGCCGACTGATGTTGAGATGTACAATATGTCTCCTCTAGTTTGA
- Protein Sequence
- MRLLREFQDIYAKGPQANHPDRLPKKNSSNHEGGRNSSNHEGGRNSCNHEVGRNSSNHEGGRNSSNHEGGRNSSNHEGGRNSSNHEGGRNSSNHEVGRNSSNHEGGRNSSNHEGGRNSSNHEGGRNSSNHGGGGLETVEVVCYHCGHGSVSLARLRGHIRTNHTHTSPHPLSCRYCNHTADRSSHLVQQIQSEQTGEKPLQCDYCTYRCVHRTSLKIHLKSKHRKETPIKCCQCTYSCVRFADLRNHKHLKHTKEKPYKCDHCDYRSKRHADLRSHILYKHTEEKPLKCNHCDYRCKRHRELRIHILYKHTEEKPLKCNHCDYRCKRHIELRSHILYKHTEGKPLKCNHCDYRCKQDIELRSHVLYKHTEEKPLKCNHCDYRCVRSRELKFHIQSKHTKAKPIMCNHCDYRCKRHTELRRHILSKHTQEKPIICNHCDYRCKRHIELRSHILYKHTEEKPLKCNHCTYRCVEHKSLRHHILAKHTKEKPIMCNHCDYRCVHPSSLKHHLKSKHIKGELMKCDHCDYRCVDLASLKLHIKAKHTNEKPIKCAPKCIPAARLKDHVLGKHTKDKPIKCDHCTYRCVRLAYLRSHMQYKHMKEKPIKCDHCTYRCVSTRQFNFHVLSKHSNEKPLMCTHCSYRCVQRENLNRHIKAIHTKEESWKCGHCAFRCVSISQLKNHVLSKHTEEKPLMCTHCCYRCEQDATLKHHMKTKHTNEESWKCGHCPYRCAALSLLKSHILSKHSVKKPFSCYHCTYVSVSRCNLIRHIQTKHMAERPTDVEMYNMSPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154837;
- 90% Identity
- -
- 80% Identity
- -