Adep043959.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759226.1:25146723-25156231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.002 0.35 12.8 1.2 2 23 118 140 117 140 0.96 2 20 0.64 1.1e+02 4.9 4.4 3 23 145 168 143 168 0.94 3 20 0.0036 0.62 12.0 5.6 2 23 175 197 174 197 0.94 4 20 7.9e-05 0.014 17.2 5.9 1 23 203 226 203 226 0.95 5 20 0.073 13 7.9 5.4 1 23 232 255 232 255 0.96 6 20 0.0035 0.61 12.0 8.7 2 23 262 284 261 284 0.94 7 20 0.0028 0.49 12.3 5.5 1 23 290 313 290 313 0.96 8 20 0.0014 0.25 13.3 3.4 2 23 320 342 319 342 0.95 9 20 0.0025 0.44 12.5 5.9 1 23 348 371 348 371 0.96 10 20 0.2 35 6.5 4.0 1 23 377 400 377 400 0.95 11 20 0.011 1.9 10.5 5.1 1 23 406 429 406 429 0.96 12 20 0.2 35 6.5 4.0 1 23 435 458 435 458 0.95 13 20 0.0004 0.069 15.0 4.7 1 23 464 487 464 487 0.96 14 20 0.082 14 7.8 6.4 2 23 494 516 493 516 0.93 15 20 0.0014 0.25 13.3 3.6 2 23 523 545 522 545 0.94 16 20 0.093 16 7.6 7.5 2 23 552 574 551 574 0.93 17 20 0.024 4.1 9.4 2.3 2 23 581 603 580 603 0.94 18 20 0.0003 0.052 15.4 7.1 1 23 609 632 609 632 0.96 19 20 0.00048 0.082 14.8 5.7 2 23 639 661 638 661 0.94 20 20 0.0012 0.22 13.5 7.8 1 23 667 690 667 690 0.95
Sequence Information
- Coding Sequence
- ATGCTGGAATCGTGGACTTGGTTCCGGGTCAGGAACCAACAACCGGCCGTAGAAGAAACAATTATGGCCAAACAGGAGAGGGAGGCATTTGATTTCACGTTTAGCAGTACATCCGTAGAAGATACAATTACGGTGAAACAGGAGCCGGAGACACATGATTCCACATTTAACAGTACATGGTCAGAAACACACATATACATCAAGCAAGAGCCGGAGCAGATAGCAGAATATTGTCCTTCGACCAGCGCTTGGCCAGGAGCACAAAGATCATTCATCAAAGAAGAGCCAGAGCTCGTAATAGAATATTCACCTCCGGGCAGCCCTTATAATACCCACCAAATGGCTCCAGTGGTTTGTTATTATTGTAGACGCAGTTTTGTCAGTTTGGGCAAGACCAGGAGACATATCCGAAATCGCCACACTCACAGCCCATGTAGCTCTGATCATTGTCCTTATAAATGCGTTGGTCATTCGTTGATGAAATTACATATGCAGACTAAACATACGAAGGAGAAGCCGTTGAAGTGCGAACACTGCACTTACAGATGTGTTAAGAAGTCAAATTTGAAGTACCATATACAGGCCAAACATACGAAGGTGAAACCATTCACGTGTGAACACTGCACTTACAGATGTGTTCAGAAGTCAAATTTGAAGCGTCATATACAGGCCAAACATATGAAAGAGAAGCCATTCCAGTGTGAACACTGCATTTACAGATGTAATCAGAAGTCACTTTTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAGCCATTGAAGTGTGAACACTGCACTTACAGATGTAATAAAAAGTCACATTTGAAGCGCCATATACAGGCCAAACATACGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGATGTAATCAGAAGTCACTTTTGATGTACCATATACAGGCCAAACATACGAAGGAGAAACCATTGAAGTGTGAACACTGCACTTACAGTTGTGTAGACATGTCAAGTTTGAAGCTCCATATACGGGCCAAACATACGAATCAGAAACCATTTAAGTGTGAACACTGCACTTACAGATGTGTTCAGACGTCTAATCTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAACCTTTCCAGTGTGAACACTGCACTTACAGTTGTGTTCAGATGTCAATTCTGAAGTACCATATACAGGCCAAACATATGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGATGTGTTCAGAAGTCAATTTTGAAGCGCCATATACAGGCCAAACATATGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGTTGTGTTCAGATGTCAATTCTGAAGTACCATATACAGGCCAAACATACCAAGGAGAATCCGTTCAAGTGCGATTATTGTAGTTACAGATGTGTTCGGAAGTCAAGTTTGAAGTACCACATACAGGCCAAACATACGAAGGAGAAGCTGTTGAAGTGTGAACACTGCACTTACAGATGTGTTCACATGTCAGATTTGGAAAAACATAAACAGGCCAAACATACGAATCAGAAACCATTGAAGTGTGAACGCTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGAACCACATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGTGAACACTGCACTTACAGATGTGTTCATATGTCAgatttgaaaaaacataaacaGGCCAAACATACGAATCAGAAACCATTGAAGTGTGAACTTTGCACTTACAGATGTGTTCAGATGTCATATCTGAAGTACCATATACAGGCCAAACATACGATGGAGAAACCGTTCAAGTGCGAACACTGCAATTACGGATGTAGTCAGAAGTCACATTTGAAGCTCCATATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGTGAACACTGCACTTTCAGATGTGTTCAGAAGTCAAATTTGAAGCGCCATATACAGGCCAAACATAAGAAGGAGAAACCATTCAAGTGTGAACACTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGCACCATATACTGGCCAAACATACGAATCAGAAACCATGTGATGTCAGTTGTGTTCTGTGA
- Protein Sequence
- MLESWTWFRVRNQQPAVEETIMAKQEREAFDFTFSSTSVEDTITVKQEPETHDSTFNSTWSETHIYIKQEPEQIAEYCPSTSAWPGAQRSFIKEEPELVIEYSPPGSPYNTHQMAPVVCYYCRRSFVSLGKTRRHIRNRHTHSPCSSDHCPYKCVGHSLMKLHMQTKHTKEKPLKCEHCTYRCVKKSNLKYHIQAKHTKVKPFTCEHCTYRCVQKSNLKRHIQAKHMKEKPFQCEHCIYRCNQKSLLKYHIQAKHTKEKPLKCEHCTYRCNKKSHLKRHIQAKHTKEKPFQCEHCTYRCNQKSLLMYHIQAKHTKEKPLKCEHCTYSCVDMSSLKLHIRAKHTNQKPFKCEHCTYRCVQTSNLKYHIQAKHTKEKPFQCEHCTYSCVQMSILKYHIQAKHMKEKPFQCEHCTYRCVQKSILKRHIQAKHMKEKPFQCEHCTYSCVQMSILKYHIQAKHTKENPFKCDYCSYRCVRKSSLKYHIQAKHTKEKLLKCEHCTYRCVHMSDLEKHKQAKHTNQKPLKCERCTYRCVRKSSLKNHIQAKHTKEKPLKCEHCTYRCVHMSDLKKHKQAKHTNQKPLKCELCTYRCVQMSYLKYHIQAKHTMEKPFKCEHCNYGCSQKSHLKLHIQAKHTKEKPLKCEHCTFRCVQKSNLKRHIQAKHKKEKPFKCEHCTYRCVRKSSLKHHILAKHTNQKPCDVSCVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154727;
- 90% Identity
- iTF_00154727;
- 80% Identity
- -