Adep043946.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759226.1:25087527-25092547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0019 0.33 12.9 1.2 2 23 84 106 83 106 0.96 2 20 0.55 95 5.2 8.4 2 23 112 134 111 134 0.96 3 20 0.0034 0.59 12.1 5.6 2 23 141 163 140 163 0.94 4 20 7.5e-05 0.013 17.3 5.9 1 23 169 192 169 192 0.95 5 20 0.068 12 8.0 5.4 1 23 198 221 198 221 0.96 6 20 0.0033 0.58 12.1 8.7 2 23 228 250 227 250 0.94 7 20 0.0027 0.46 12.4 5.5 1 23 256 279 256 279 0.96 8 20 0.0013 0.23 13.4 3.4 2 23 286 308 285 308 0.95 9 20 0.0024 0.41 12.6 5.9 1 23 314 337 314 337 0.96 10 20 0.19 33 6.6 4.0 1 23 343 366 343 366 0.95 11 20 0.01 1.8 10.6 5.1 1 23 372 395 372 395 0.96 12 20 0.19 33 6.6 4.0 1 23 401 424 401 424 0.95 13 20 0.00037 0.065 15.1 4.7 1 23 430 453 430 453 0.96 14 20 0.077 13 7.8 6.4 2 23 460 482 459 482 0.93 15 20 0.0007 0.12 14.3 5.3 2 23 489 511 488 511 0.94 16 20 0.088 15 7.7 7.5 2 23 518 540 517 540 0.93 17 20 0.022 3.9 9.5 2.3 2 23 547 569 546 569 0.94 18 20 0.00028 0.049 15.5 7.1 1 23 575 598 575 598 0.96 19 20 0.00045 0.078 14.9 5.7 2 23 605 627 604 627 0.94 20 20 0.0012 0.2 13.6 7.8 1 23 633 656 633 656 0.95
Sequence Information
- Coding Sequence
- ATGTTTGAAGCTGTAGAAGATACAATTACGGTCAAACAGGAGCCGGAGACAGATGATTCCACGTTTAGCAGTACATGGTCAGAAACACACATATACATCAAGCAAGAGCCGGAGCAGATAGCAGAATATTGTCCTTCGACCAGCGCTTGGCCAGGAGCACAAAGATCATTCATCAAAGAAGAGCCAGAGCTCGTAATAGAATATTCACCTCCGGGCAGCCCTTATAATACCCACCAAATGGCTCCAGTGGTTTGTTATTATTGTAGACGCAGTTTTGTCAGTTTGGGCAAGACCAGGAGACATATCCGAAATCGCCACACTCACAGCCCATGTAGCTGTGATCATTGTCCTTATAAATGCGTTGGTCATTCGTTGATGAAATTACATATGCAGACTAAACATACGAAGGAGAAGCCGTTGAAGTGCGAACACTGCACTTACAGATGTGTTAAGAAGTCAAATTTGAAGTACCATATACAGGCCAAACATACGAAGGTGAAACCATTCACGTGTGAACACTGCACTTACAGATGTGTTCAGAAGTCAAATTTGAAGCGTCATATACAGGCCAAACATATGAAAGAGAAGCCATTCCAGTGTGAACACTGCATTTACAGATGTAATCAGAAGTCACTTTTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAGCCATTGAAGTGTGAACACTGCACTTACAGATGTAATAAAAAGTCACATTTGAAGCGCCATATACAGGCCAAACATACGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGATGTAATCAGAAGTCACTTTTGATGTACCATATACAGGCCAAACATACGAAGGAGAAACCATTGAAGTGTGAACACTGCACTTACAGTTGTGTAGACATGTCAAGTTTGAAGCTCCATATACGGGCCAAACATACGAATCAGAAACCATTTAAGTGTGAACACTGCACTTACAGATGTGTTCAGACGTCTAATCTGAAGTACCATATACAGGCCAAACATACGAAGGAGAAACCTTTCCAGTGTGAACACTGCACTTACAGTTGTGTTCAGATGTCAATTCTGAAGTACCATATACAGGCCAAACATATGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGATGTGTTCAGAAGTCAATTTTGAAGCGCCATATACAGGCCAAACATATGAAGGAGAAGCCATTCCAGTGTGAACACTGCACTTACAGTTGTGTTCAGATGTCAATTCTGAAGTACCATATACAGGCCAAACATACCAAGGAGAATCCGTTCAAGTGCGATTATTGTAGTTACAGATGTGTTCGGAAGTCAAGTTTGAAGTACCACATACAGGCCAAACATACGAAGGAGAAGCTGTTGAAGTGTGAACACTGCACTTACAGATGTGTTCACATGTCAGATTTGGAAAAACATAAACAGGCCAAACATACGAATCAGAAACCATTGAAGTGTGAACACTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGAACCACATACAGGCCAAACATACGAAGGAGAAGCCGTTGAAGTGTGAACACTGCACTTACAGATGTGTTCATATGTCAgatttgaaaaaacataaacaGGCCAAACATACGAATCAGAAACCATTGAAGTGTGAACTTTGCACTTACAGATGTGTTCAGATGTCATATCTGAAGTACCATATACAGGCCAAACATACGATGGAGAAACCGTTCAAGTGCGAACACTGCAATTACGGATGTAGTCAGAAGTCACATTTGAAGCTCCATATACAGGCCAAACATATGAAGGAGAAGCCGTTGAAGTGTGAACACTGCACTTTCAGATGTGTTCAGAAGTCAAATTTGAAGCGCCATATACAGGCCAAACATAAGAAGGAGAAACCATTCAAGTGTGAACACTGCACTTACAGATGTGTTCGGAAGTCAAGTTTGAAGCACCATATACTGGCCAAACATACGAATCAGAAACCATGTGATGTCAGTTGTGTTCTGTGA
- Protein Sequence
- MFEAVEDTITVKQEPETDDSTFSSTWSETHIYIKQEPEQIAEYCPSTSAWPGAQRSFIKEEPELVIEYSPPGSPYNTHQMAPVVCYYCRRSFVSLGKTRRHIRNRHTHSPCSCDHCPYKCVGHSLMKLHMQTKHTKEKPLKCEHCTYRCVKKSNLKYHIQAKHTKVKPFTCEHCTYRCVQKSNLKRHIQAKHMKEKPFQCEHCIYRCNQKSLLKYHIQAKHTKEKPLKCEHCTYRCNKKSHLKRHIQAKHTKEKPFQCEHCTYRCNQKSLLMYHIQAKHTKEKPLKCEHCTYSCVDMSSLKLHIRAKHTNQKPFKCEHCTYRCVQTSNLKYHIQAKHTKEKPFQCEHCTYSCVQMSILKYHIQAKHMKEKPFQCEHCTYRCVQKSILKRHIQAKHMKEKPFQCEHCTYSCVQMSILKYHIQAKHTKENPFKCDYCSYRCVRKSSLKYHIQAKHTKEKLLKCEHCTYRCVHMSDLEKHKQAKHTNQKPLKCEHCTYRCVRKSSLKNHIQAKHTKEKPLKCEHCTYRCVHMSDLKKHKQAKHTNQKPLKCELCTYRCVQMSYLKYHIQAKHTMEKPFKCEHCNYGCSQKSHLKLHIQAKHMKEKPLKCEHCTFRCVQKSNLKRHIQAKHKKEKPFKCEHCTYRCVRKSSLKHHILAKHTNQKPCDVSCVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154730;
- 90% Identity
- iTF_00154730;
- 80% Identity
- -