Adep028348.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- Rfx1
- Assembly
- GCA_963662175.1
- Location
- OY759220.1:9482118-9495955[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-37 6e-33 114.7 0.2 3 78 51 126 49 127 0.97 2 2 2.3 3.8e+04 -3.2 0.0 43 55 458 472 450 484 0.61
Sequence Information
- Coding Sequence
- ATGCTTTCTTCTCTTAACCTACCTCTGCAGGATGTTGCTTATCTGGTGAATGCAAGTGGAGGCTCTCAGGTGACCTCTGAGTCCACCCCTGACTCTTCCACACCCAACTCGAACCAGCCAAACATTGTACATGCCACCCGGGTCTCTGCCACAACGGTACAATGGCTGTTGGAGAACTATGAGACAGCGGAAGGTGTCTCACTGCCCAGGTCAACACTATACAACCACTACCTAAGACACTGCTACGAGAGCAAACTGGACCCTGTCAATGCGGCCTCTTTTGGAAAACTGATACGGTCTGTGTTCCTTGGTCTCAGAACTCGACGACTTGGAACTCGGGGAAATTCTAAGTACCATTACTACGGTATTCGGCTGAAGGCGAGTTCTCTGCTAACTCAGACTGCTCAGGATCTAGGGGAGGAGGGGAGCTCAAGAGGCGGCAAGAGGTTCAGGATGTCGCAGGCCAAGGTGGAGGAGTCCGGCCAGGCCACACCTCTTCAGGAATACCTTGGAGATAGCACAAATGCCATTCCAGACCTTCCAGAGATAGAGATTCCTTCCGGAATGCAGCTTCCTCATCTTTGTTCTTTGGAGGACATTGACACGTTCAGATCTATATACAGGGAACACTGTGAGGCTTTCTTAGATGCAATCGTCAATTTGGAGTTTGCAACTATAGAAACTTTGTGGCGTGAATTTTGGAGAACTCAAGAGAATGCCAATGGGGATGAatgtgaagaagaaaaatatttatctaaAACGAAACTTCTGATGATCTCCAAACTGAGGCCCGTTCAAGAGTTTGTCAAAACGGTGGATTTTTTGTTTTACCAAAACCTGGTTCAAGTTCTTATCCCTGACGTTCTTCGGCCCATACCTAgttccttgacacaGGCAATAAGAAATTTCGCCAAAGGTCTTGAATCCTGGCTGTCTTCTGCCATGTCCGGTTGTCCCTCAGATATGGTTGATATTAAGGTGTCAGCAGTGTGCGCCCTGGGACAGACCCTCCGTCGATATACCTCTCTGAACCACTTAGCCCAAGCAGCGAGGGCTGTTCTACAGAACTCTGTACAGATCAACCAAATGTTGGCTGATCTCAACAGGGTCGACTTCCACAATGTTCAGGAACAGGCATCATGGGTGTGTGAGTGTGACAGCGGGCTGGTGGCTAGGCTGGAGGCTGACTTCAAGGCCACCCTCCAGGCACAGAACTCTCTGGAGGAGTGGGCCGCCTGGCTCCGAGCTGTCGTCAACACAGTGCTCAAGCCTTACCGAGGTCGAAGGGGCTTCTCCACCGCAGCACGTCAACTTCTCCTCAAGTGGTCCTTTTACAGTTCCATGGTGATCCGAGACCTGACTTTGCGATCTGCCGCCAGTTTCGGCTCCTTTCACCTCATCCGCCTCCTCTACGATGAGTACATGTTCTATCTGGTGGAGCATCAGGTTGCCAGCGCCACTGGCACCAGTCCTATCGCTGTTATGGCCACTAAAAGCTGCGGGATTGATTTTTCGGAAAGGAATGGcaccaataataatataattagcAATAACAATAACAGTAAAGATCCAGAAGAGAGTTGTTTAAAGAAAATTCGTTTGAGCTAA
- Protein Sequence
- MLSSLNLPLQDVAYLVNASGGSQVTSESTPDSSTPNSNQPNIVHATRVSATTVQWLLENYETAEGVSLPRSTLYNHYLRHCYESKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRLKASSLLTQTAQDLGEEGSSRGGKRFRMSQAKVEESGQATPLQEYLGDSTNAIPDLPEIEIPSGMQLPHLCSLEDIDTFRSIYREHCEAFLDAIVNLEFATIETLWREFWRTQENANGDECEEEKYLSKTKLLMISKLRPVQEFVKTVDFLFYQNLVQVLIPDVLRPIPSSLTQAIRNFAKGLESWLSSAMSGCPSDMVDIKVSAVCALGQTLRRYTSLNHLAQAARAVLQNSVQINQMLADLNRVDFHNVQEQASWVCECDSGLVARLEADFKATLQAQNSLEEWAAWLRAVVNTVLKPYRGRRGFSTAARQLLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHQVASATGTSPIAVMATKSCGIDFSERNGTNNNIISNNNNSKDPEESCLKKIRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -