Alei099941.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:23357280-23358800[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 4.4e+04 -2.7 0.2 40 44 92 96 72 123 0.64 2 10 0.0058 1.4e+02 5.3 0.0 20 47 156 183 152 190 0.85 3 10 0.00023 5.6 9.8 0.0 20 53 212 245 209 246 0.92 4 10 0.033 8e+02 2.9 0.0 21 45 269 293 266 296 0.90 5 10 0.00036 8.8 9.2 0.0 20 52 296 328 293 330 0.88 6 10 0.0018 43 7.0 0.0 21 48 325 352 322 358 0.86 7 10 0.057 1.4e+03 2.2 0.0 25 52 357 384 352 386 0.81 8 10 0.73 1.8e+04 -1.4 0.0 25 44 385 404 380 408 0.64 9 10 0.003 73 6.3 0.1 20 53 408 441 405 442 0.89 10 10 0.21 5e+03 0.4 0.0 20 46 464 490 461 493 0.81
Sequence Information
- Coding Sequence
- ATGATCACGATCTTGGAAATACACGAATTCAAGCAACTCTGCATGCAAACCATATCCCTGCTACCGAAACCATTTAACGATGGCTTAACATttgtcaaaaaagaaattaccaaaACCGAATTGGAAGATAATAGCATTAATGGtgaattacaaattatcaaagATGACTGTTTAGAAATCGTTGCAGATATACCGGTATGCAttgaaaaactgcaaaaaacagAACCGTATTATTGTCACGACTGTGACTTCAGCACTAACACGAAGACAAATTTAATTCGACACGCGAGGATACACCAGAGCATTGGATCTTTTCAATGCGACATATGTAATTATAGCTGCACGAAGAAGGCATCACTTCAAATACATTTTCGAATACATACTGGAGAGAGACTATATAAGTGCACTGAGTGTGATTATAGATCAGCACGAAAAAGTACACTCCAACTTCATTACATGAAGCACAGTTCAGAGAAATCATTTGTGTGTGACACTTGTGGGTTTGCTACTCGGTATCAGCGTAGTTTAAAGAAACACCTGGTAATTCACAGTGCTGTGACACCATTTGTATGTAAAACTTGTGGATTTTCTACTAGACGCAAACAGAGTTTAAAGACCCATATGGTCATTCACAGCTCAGAAAAACCATTTGTTTGTGAAACATGTTGGTTTTCCACTCGATATCAGACTAGTTTGAAGAAACACATGAAGCTTCACAGCTCGGAAAAACCATTTGTTTGTGAAACATGTGGAGTTTCTTTTGGAGATGAGCAGTATTTAAATAATCACATGATCGTACACAGCTCAAAAAAACCATTTGTTTGTGGAACTTGTGCGTTTTCTACTCGATATAAACAGAATTTAAAGGATCACGTGGCCATACACAGCTCAGAAAAACCATTTGTATGTGAAACTTGTGGTTTTTCTACTAGACGTaaacagaatttaaagaaacacaTGTTCGTTCACAGCTCAAAAAAACCATTTGTATGTGAAATTTGTGCATATTCTACTAGACGTAAAGGTAATTTAAAAGACCACGTTGCTATTCACACCTTAGAAAAATCATTTGTTTGTGACACTTGTGGGCTTTCTACTAAAAGCATACGTAATCTAAAGGCTCATATGCTTATTCATAATGCTGTGAAACCATTTGTATGCGAAACTTGTGGAATTTCTTTTGCAGATAAGAGACATTTAAAGAATCACATGATTGTTCACAACTCAGAAAAACCATTCGTTTGTGATACCTGTGGGTTCTCTGCTCAACGTAAGTGTAGTTTAAAGAGACACATGAAGATTCACAGTTCGGTAAAACCATTTGTGTGTGAAAAGTGTGGATTGTCATTTGGAGAGAAGCAGAGTTTAAAGATACACATGATTAGTCACAGCTCAGAAAAACCATTTGTTTGTAAAACGTGTCAGTTCTCCACTGGATATCAGTATAGTTTGAAGAAACACATGATGCTTCACACCTCGGAGTATAATTTAAAGAATCACATAGCCCTGCACAAAAAGTAG
- Protein Sequence
- MITILEIHEFKQLCMQTISLLPKPFNDGLTFVKKEITKTELEDNSINGELQIIKDDCLEIVADIPVCIEKLQKTEPYYCHDCDFSTNTKTNLIRHARIHQSIGSFQCDICNYSCTKKASLQIHFRIHTGERLYKCTECDYRSARKSTLQLHYMKHSSEKSFVCDTCGFATRYQRSLKKHLVIHSAVTPFVCKTCGFSTRRKQSLKTHMVIHSSEKPFVCETCWFSTRYQTSLKKHMKLHSSEKPFVCETCGVSFGDEQYLNNHMIVHSSKKPFVCGTCAFSTRYKQNLKDHVAIHSSEKPFVCETCGFSTRRKQNLKKHMFVHSSKKPFVCEICAYSTRRKGNLKDHVAIHTLEKSFVCDTCGLSTKSIRNLKAHMLIHNAVKPFVCETCGISFADKRHLKNHMIVHNSEKPFVCDTCGFSAQRKCSLKRHMKIHSSVKPFVCEKCGLSFGEKQSLKIHMISHSSEKPFVCKTCQFSTGYQYSLKKHMMLHTSEYNLKNHIALHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153732;
- 90% Identity
- iTF_00153732;
- 80% Identity
- iTF_00153732;