Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069438.1:23337491-23339605[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2 4.9e+04 -2.8 0.2 27 46 65 84 63 86 0.78

2 17 0.11 2.7e+03 1.2 0.0 22 48 161 187 155 193 0.81

3 17 0.0034 84 6.1 0.0 21 52 216 247 212 249 0.91

4 17 0.17 4e+03 0.7 0.0 20 52 243 275 239 277 0.80

5 17 0.056 1.4e+03 2.2 0.0 21 45 272 296 269 299 0.90

6 17 0.00052 13 8.7 0.0 20 52 299 331 297 333 0.88

7 17 0.0001 2.4 11.0 0.4 21 49 328 356 325 359 0.90

8 17 0.11 2.6e+03 1.3 0.0 22 47 359 384 357 391 0.80

9 17 0.012 3e+02 4.3 0.0 20 52 413 445 410 447 0.91

10 17 0.011 2.6e+02 4.5 0.0 20 53 441 474 439 475 0.91

11 17 0.0098 2.4e+02 4.6 0.0 20 53 469 502 466 503 0.91

12 17 0.011 2.6e+02 4.5 0.0 20 53 497 530 495 531 0.91

13 17 0.021 5e+02 3.6 0.1 20 53 525 558 523 559 0.91

14 17 0.0089 2.2e+02 4.8 0.0 21 44 582 605 579 609 0.90

15 17 0.00017 4.2 10.2 0.0 20 52 609 641 606 643 0.87

16 17 0.0062 1.5e+02 5.3 0.0 21 48 638 665 636 671 0.86

17 17 0.33 7.9e+03 -0.3 0.0 24 45 669 690 664 693 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2	4.9e+04	-2.8	0.2	27	46	65	84	63	86	0.78
2	17	0.11	2.7e+03	1.2	0.0	22	48	161	187	155	193	0.81
3	17	0.0034	84	6.1	0.0	21	52	216	247	212	249	0.91
4	17	0.17	4e+03	0.7	0.0	20	52	243	275	239	277	0.80
5	17	0.056	1.4e+03	2.2	0.0	21	45	272	296	269	299	0.90
6	17	0.00052	13	8.7	0.0	20	52	299	331	297	333	0.88
7	17	0.0001	2.4	11.0	0.4	21	49	328	356	325	359	0.90
8	17	0.11	2.6e+03	1.3	0.0	22	47	359	384	357	391	0.80
9	17	0.012	3e+02	4.3	0.0	20	52	413	445	410	447	0.91
10	17	0.011	2.6e+02	4.5	0.0	20	53	441	474	439	475	0.91
11	17	0.0098	2.4e+02	4.6	0.0	20	53	469	502	466	503	0.91
12	17	0.011	2.6e+02	4.5	0.0	20	53	497	530	495	531	0.91
13	17	0.021	5e+02	3.6	0.1	20	53	525	558	523	559	0.91
14	17	0.0089	2.2e+02	4.8	0.0	21	44	582	605	579	609	0.90
15	17	0.00017	4.2	10.2	0.0	20	52	609	641	606	643	0.87
16	17	0.0062	1.5e+02	5.3	0.0	21	48	638	665	636	671	0.86
17	17	0.33	7.9e+03	-0.3	0.0	24	45	669	690	664	693	0.82

Sequence Information

Coding Sequence: ATGCAAACCAAATCCTTGCTACCGAAACCTTTTAACGATGGCTTAACATTTGTCaaagaagaaattattaaaaccgAGTTGAAAGATAATAGCATTAATGCTGAATTACAAATCATCAAGGATGAATGTTTAGAAATCAATACAGATATACCCGTCTGCATTGaagaactacaaaaaacaaaactgtattaTTGTCACGACTGTGACTTCAGCATTAACACGAAGACAAATTTAATTCGACACGTGAGGATACACAAGAGCATTGGATCTTTTCAATGCGACATATGTAATTATAGCTGCATGAAGAAGGCATCACTTCAAATACATTTTCGAATACATACTGGAGAGAGACTATATAAGTGTACTGAGTGTGATTATAGATCAGCAATAAAAAGTACACTCAAACTTCATTACTTGAAGCACAGCAGCaagaatttatatcaaaatcaaAGTGCACACAAACGGATAATTCACAGTTTGGAGAAATCATTTGTTTGTGACACTTGTGGGTTTGCTACTCGGTATCAACGTAGTTTAAAGAAACACATGGTAATTCACAGTGTTGTGACGCCATTTGTGTGTCAAACTTGTGGGTTTTCTACTACATGTAAACAGAATTTAAAGACCCACATGGTCATTCATGGCTCAGAAAAACCATTTGTTTGTGAAACGTGTTGGTTCTCCACTCGATATCAGACTAGTTTGAAGAAACACAAGAAGCTTCACAGCTCGGAAAAACCATTTGCTTGTGAAACGTGTGGAGTTTCTTTTGGAGATAGGCAGGATTTAAATAATCACATGATCGTACACAGCTCAAAAAAACCATTCGTTTGTGGAACTTGTGGGTTTTCTACtcgatataaacaaaatttaaaggaTCACATGGCCATACACAGCTCAGAAAAACCATTTGTATGTGAAACTTGTGGGTTTTCTACTAGACGTaaacagaatttaaagaaacacaTGGTTGTTCACAGCTCAAGAAAACCATTTGTTTGTGAAATTTGTGCGTATTCTACTAGAcgtaaacgtaatttaaaagaCCATATTGCTATTCACATGTTCACATgtgaaaaaacatttgtttgtgaCACTTGTGGGTTTTCTACTAAAAGGAAACGTAATTTAAAGGCTCATATGGTCATTCATAATGCTGTGAAATCATTTGTATGTGAAACTTGTGGAATTTCTTTTGTAGATAAAGAACTTTTAAAGGATCACATGATTGCTCACAACTCAGAAAAACCACTTGTTTGTGAAACGTGTGGGTTCTCCACTCGATATCAGTATAGTTTGAACAAACACATGATGCTTCACAGCTCGGAAAAACcatttgtttgtgaaacttgtggATTATCTTTTGGaaataagtataatttaaaGAACCACATAGCCCTGCACAGCTCAGAAAAACCATTTGTTTGTGAAACGTGTGGATTATCTTTTGGaaataagtataatttaaaGAACCACATAGCCCTGCACAGCTCAGAAAAACcatttgtttgtgaaacttgtggATTATCTTTTGGaaataagtataatttaaaGAACCACATAGCTCTGCACAGCTCAGAAAAACCATTTGTTTGTGAAACGTGTGGATTTTCTACTCGATATCATAGTAGTTTTAAGAAACACGTGAAGCTTCACAGCTCGGAAAAACCATTTGTTTGTGAAACGTGTGGAGTTTCTTTTGGAGATAAGCAGGATTTGATTAATCACATGATCATACACAGCTCAAAAAAACCATTCGTTTGTGGAACTTGTGGGTTCTCGACTCGATATAATCGGAATTTAAAGGTTCACATGGTCATACACAGCTCGGAAAAACCATTTGTATGCGAAACTTGTGGATTTTCTACTAGACGTaaacagaatttaaagaaacacTTGCTCGTTCACAGCTCAAAAAAACCATTTGTTTGTGAAATTTGTGCGTATTCTACTAGACTTAAGGGTAATTTAAAGGAGCACGTTGCTATTCACACCTTAGAAAAATCATTTGTTTGTGACACTTGTGGGCTTTCTACTAAAAGCAAACGTAATCTAAAGGCTCATATGGTCATTCATAATGACGATTCACAGTTCGGTAAAATCGTTTGTGTGTGA
Protein Sequence: MQTKSLLPKPFNDGLTFVKEEIIKTELKDNSINAELQIIKDECLEINTDIPVCIEELQKTKLYYCHDCDFSINTKTNLIRHVRIHKSIGSFQCDICNYSCMKKASLQIHFRIHTGERLYKCTECDYRSAIKSTLKLHYLKHSSKNLYQNQSAHKRIIHSLEKSFVCDTCGFATRYQRSLKKHMVIHSVVTPFVCQTCGFSTTCKQNLKTHMVIHGSEKPFVCETCWFSTRYQTSLKKHKKLHSSEKPFACETCGVSFGDRQDLNNHMIVHSSKKPFVCGTCGFSTRYKQNLKDHMAIHSSEKPFVCETCGFSTRRKQNLKKHMVVHSSRKPFVCEICAYSTRRKRNLKDHIAIHMFTCEKTFVCDTCGFSTKRKRNLKAHMVIHNAVKSFVCETCGISFVDKELLKDHMIAHNSEKPLVCETCGFSTRYQYSLNKHMMLHSSEKPFVCETCGLSFGNKYNLKNHIALHSSEKPFVCETCGLSFGNKYNLKNHIALHSSEKPFVCETCGLSFGNKYNLKNHIALHSSEKPFVCETCGFSTRYHSSFKKHVKLHSSEKPFVCETCGVSFGDKQDLINHMIIHSSKKPFVCGTCGFSTRYNRNLKVHMVIHSSEKPFVCETCGFSTRRKQNLKKHLLVHSSKKPFVCEICAYSTRLKGNLKEHVAIHTLEKSFVCDTCGLSTKSKRNLKAHMVIHNDDSQFGKIVCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00153707;
90% Identity: iTF_00153707;
80% Identity: iTF_00153707;