Alei054998.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:25870949-25872694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.26 14.4 0.6 1 23 116 138 116 138 0.98 2 13 0.0003 0.071 16.2 1.0 2 20 213 231 212 233 0.94 3 13 0.011 2.7 11.2 3.2 3 23 243 263 242 263 0.96 4 13 1.4 3.2e+02 4.7 4.1 1 23 279 302 279 302 0.90 5 13 0.072 17 8.7 0.2 2 23 309 330 308 330 0.95 6 13 0.0014 0.34 14.1 0.9 2 23 343 364 342 364 0.93 7 13 0.0073 1.8 11.8 3.0 1 20 369 388 369 391 0.94 8 13 0.008 1.9 11.7 3.1 1 23 396 419 396 419 0.90 9 13 0.028 6.7 10.0 8.3 1 23 425 447 425 447 0.96 10 13 0.00035 0.085 16.0 1.6 1 23 453 475 453 475 0.99 11 13 0.00077 0.18 14.9 9.0 1 23 481 505 481 505 0.98 12 13 0.00057 0.14 15.3 2.4 1 23 511 533 511 533 0.97 13 13 0.00013 0.032 17.3 5.8 2 23 540 561 539 561 0.92
Sequence Information
- Coding Sequence
- atgGCAATTGTTCTAGAAATACCGAGAGATATTGATAAATTATGTCGCACTTGCATGAATTTAATTGACTGCGAAAATAATGTTCCCAATTTTGTAATAGTCGACAACACACAGACAGAACTATGTGGCATGCTTCAAACTGTAACATCTTTAAAGGTAACTTTACAAGATGGTTTACCGAAGAGTTTATGTTCGCATTGTGCCGACCAACTGAAAACTGCTTATACGTTTATTCTTCAATGCACACAAGTTGATCACAATCTTAAAAGAATTCTCGAAAGTTCCAATTGCATCAATGGGGACCCTTCTAatgtaaccaaattaaaaactgaaacattAGATGACTTTACTTGTTCATTATGTGAATTATCATTTATGAGTTATTATGAATTAAGCATGCATTTGATTACCCAtaattcttcaaaaagtttaataGAACGCTTTAATGAAAGCTTTTGCGATAtcgataataaatataatattgatGTAAAGCAGGATATAGAAGAACAGAGGTTGTTGATCGAAGAATGTAGGAATAACTTAAGCTTACAGAATGTAACTTCAATAGGTGCAAAATGTCATAAAACTGCAGTTGACAAAACTATAAGCACTGgaccaatatttaaaaaacgattgcaatgtaaaaattgtaataaacactTTCAATCGGAAGAAAGTCTTCAAAGGCATATTTCAGAATGTGGTAGTAAATATAAACCTGCCTTATGTAATCTATGTGGAAAAACGTGTAAAGATTTTTCAAGTTTGtctttacattttctaaatcaTTCACTTACATCAGACCTGCTAAGTGAAAATGTGGTGTCGGAGGTTCATTTTTGCGAATTTTGTGGACAATTGTTTGAAAATGATTCTTGTTTAAGTCAACACTATACCGAGCAACATGAAAATCGACCAAATATGGAATGTTTCgaatgttttgaaatatttgacaCAGAAAAGGATTTCTTAGCTCATTTAACATTGCATAGCAATGACGAAAATAGCGATTCGTATGAGGAACTTCAGTGTGTTTTATGTccagaaaaatttaattctaaatcaGAATTGTACAAACATTCTTTTTCTCATTTAATGAAAAGGTATACTTGTCGAAAGTGTTCTTTGTCTTTTTGCACTCAGGACTCTTATTTTGCCCACTTACCAGTCCATTCTAGTGGCAAACATGTTTGTTCTTTATGTGGGAAATGTTTAAGTACTAGTAGTGCATTAAAATGTCATATAGAAGGGGTTCATCCTGTCGAGTTACAACACTGTTGCTCTGTTTGTGGAAAGTGTTTTGCAACGTTCACACGCTTGAAGACACATTCGAAAATACATACAAGtgacaaaaaatatgtatgcaGTTACTGCGGATATAGTTCTCATAAATCAGGGGATTTAGTTATGCATACGAGAACACATACAAGTGAAAGACCATACAAATGTACTTTCCCCAATTGCACTATGAGTTTCAAGACTTCGAGCCATCTATGCCACCACGTCAGAAGACATTTGCAAATCAAGAAGTTTAATTGCAGCATTTGTTTAATGAAGTTTTCTACAAGTCATGGGTTAAAAGTTCATCAAATGCAACATACTGGTGAAAAGCCTCATCCGTGTATCGtctgtaaaaaaacttttcgtaGGAAGTATCATCTTAAAGTTCATATGAAACAACACAATCGTTcttaa
- Protein Sequence
- MAIVLEIPRDIDKLCRTCMNLIDCENNVPNFVIVDNTQTELCGMLQTVTSLKVTLQDGLPKSLCSHCADQLKTAYTFILQCTQVDHNLKRILESSNCINGDPSNVTKLKTETLDDFTCSLCELSFMSYYELSMHLITHNSSKSLIERFNESFCDIDNKYNIDVKQDIEEQRLLIEECRNNLSLQNVTSIGAKCHKTAVDKTISTGPIFKKRLQCKNCNKHFQSEESLQRHISECGSKYKPALCNLCGKTCKDFSSLSLHFLNHSLTSDLLSENVVSEVHFCEFCGQLFENDSCLSQHYTEQHENRPNMECFECFEIFDTEKDFLAHLTLHSNDENSDSYEELQCVLCPEKFNSKSELYKHSFSHLMKRYTCRKCSLSFCTQDSYFAHLPVHSSGKHVCSLCGKCLSTSSALKCHIEGVHPVELQHCCSVCGKCFATFTRLKTHSKIHTSDKKYVCSYCGYSSHKSGDLVMHTRTHTSERPYKCTFPNCTMSFKTSSHLCHHVRRHLQIKKFNCSICLMKFSTSHGLKVHQMQHTGEKPHPCIVCKKTFRRKYHLKVHMKQHNRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151873;
- 90% Identity
- -
- 80% Identity
- -