Alat002747.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:341701-343458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2e-05 0.002 16.7 0.9 1 23 117 139 117 139 0.98 2 13 0.00011 0.0053 15.4 1.0 2 21 216 235 215 236 0.93 3 13 0.0014 0.067 11.9 2.2 3 23 247 267 246 267 0.95 4 13 0.05 2.4 7.0 2.3 1 23 283 306 283 306 0.92 5 13 1 49 2.9 0.1 2 19 313 330 312 332 0.93 6 13 0.029 1.4 7.8 0.3 3 23 350 370 348 370 0.91 7 13 9.8e-05 0.0046 15.5 3.9 1 23 375 397 375 397 0.98 8 13 0.0017 0.083 11.6 3.1 1 23 402 425 402 425 0.90 9 13 0.0057 0.27 10.0 8.3 1 23 431 453 431 453 0.96 10 13 0.00013 0.0062 15.2 1.0 1 23 459 481 459 481 0.98 11 13 0.00016 0.0074 14.9 9.0 1 23 487 511 487 511 0.98 12 13 3.9e-05 0.0019 16.8 2.8 1 23 517 539 517 539 0.98 13 13 2.7e-05 0.0013 17.3 5.8 2 23 546 567 545 567 0.92
Sequence Information
- Coding Sequence
- ATGGCTATTGTTCTAGAACTACCAAGAGATATTGATAAATTATGTCGCACTTGCATGAATTTAATTGACTATGAAAATAATGTTTCCAATTTTGTAATATTCGATAACGTACAGACAGAATTATGTGGCATGCTTCAAACTGTAACATCCTTGAAGGTAACTATACAAGATGGCTTACCGAGGAGTTTATGTTCGCGGTGCGTCAATCAAGTAAAATCTGCTTACACGTTTATTCTTCAATGCACACAAGTTGATCAAAATCTTAAGAAGATTCTTGAAAGTACCGAGTGCATCAATGGGGAACCTTCGAATGTAACTAAATTAAAAAGTGAAACATTGGAAAACGACTTTACTTGTTCATTATGTCAATTATCGTTTACCAGTTATTATGAGTTAAGCATGCACGTAATTACTCATAATTCTTCAAAAAGTTTAGTACAACGCTTTAACGAAAGTTTTTATGACATTAATAACAAACATAATATGGACGTAAATCAAGATATAGAAGAACAGAAGTTATTGATCGAAGAATGTAGGAATAACTTAAGTTTACAGAATGTTACTTCAAAAGATACGAAATGTCGTAAAATGGTGATTGATCAAGGGAAAATTAAAATCACTGTACCAAGTTTAAAAAAACAAATACAATGTGAAGATTGTAATAGAAAATTTCAATCACAAGAAAGTTTTCAAAAGCATACTTTGAAAGAATGTGGTAGTAAATACAAACTCGCTATTTGTAATTTATGTGGAAAAAACTGTAAGGATTTGTCAAGTTTATCTTTACATTTTTTAAATCACTCGCTTGCCTCAAAACTTGTAAGTGGAAATGTGGCTTCAGAGATTTATTTTTGTGAATTTTGTGGACAATTGTTTGAAGATGATTCTTGTTTAAGTCAACACTACACAGAGCAACATGAAAATCGACCAAATTGGGAATGTTTGGAATGTTTAGAAATATTTGATACAGAAAAGGATTTTCTGAGTCATTCAACTTGTGTCCATAGTTATGACGAAACCAATAGTGATTCCAAAGAGGAAATTCAGTGTATTTTATGTCCAGAAAATTTTAATTCCAAATTGGAATTGTACAAACATTCTCTTACTCATTTAATGAAAAGGTATACTTGTCGAAAGTGCTCTTTGTCTTTTTGCACTCAGGACTCTTATTTTGCTCACTTACAAGTACATTCTAGTGGCAAACATGTTTGTTCCTTATGTGGAAAATGTTTAAGTACTAACAGTGCATTAAAGTGTCATATAGAAGGTGTTCACCCAGTTGAGTTGCAACACTGTTGCTCAGTTTGTGGAAAGTGTTTTGCAACATTCACTCGACTGAAAACACATTCAAAAATTCATACAAGTGAAAAAAAATATGTGTGTAGTTACTGTGGATATAGTTCGCATAAATCAGGTGATTTAGTTATGCACACAAGAATACATACAAGTGAAAGACCTTACAAATGCACATTTCCTAATTGCACTATGAGTTTCAAGACTTCCAGCCATTTATGTCATCACGTCAGAAGACACTTGCAAATTAAAAAGTTTAAATGTAGCATTTGTTTAATGAAGTTTTCTACAAGTCATGGGTTAAAAGTTCATCAAATGCAACACACTGGCGAAAAACCTCATCCTTGCATCGTCTGTAAAAAAACTTTTCGTAGGAAGTATCATCTTAAAGTTCATATGAAGCAACACAGTCGTTCGTGA
- Protein Sequence
- MAIVLELPRDIDKLCRTCMNLIDYENNVSNFVIFDNVQTELCGMLQTVTSLKVTIQDGLPRSLCSRCVNQVKSAYTFILQCTQVDQNLKKILESTECINGEPSNVTKLKSETLENDFTCSLCQLSFTSYYELSMHVITHNSSKSLVQRFNESFYDINNKHNMDVNQDIEEQKLLIEECRNNLSLQNVTSKDTKCRKMVIDQGKIKITVPSLKKQIQCEDCNRKFQSQESFQKHTLKECGSKYKLAICNLCGKNCKDLSSLSLHFLNHSLASKLVSGNVASEIYFCEFCGQLFEDDSCLSQHYTEQHENRPNWECLECLEIFDTEKDFLSHSTCVHSYDETNSDSKEEIQCILCPENFNSKLELYKHSLTHLMKRYTCRKCSLSFCTQDSYFAHLQVHSSGKHVCSLCGKCLSTNSALKCHIEGVHPVELQHCCSVCGKCFATFTRLKTHSKIHTSEKKYVCSYCGYSSHKSGDLVMHTRIHTSERPYKCTFPNCTMSFKTSSHLCHHVRRHLQIKKFKCSICLMKFSTSHGLKVHQMQHTGEKPHPCIVCKKTFRRKYHLKVHMKQHSRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153961;
- 90% Identity
- -
- 80% Identity
- -