Alei081290.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069436.1:48088292-48092192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 1.4e+02 5.9 0.5 2 19 121 138 120 143 0.93 2 19 2.3 5.5e+02 4.0 1.9 1 20 261 280 261 282 0.94 3 19 0.24 58 7.1 2.4 1 19 370 388 370 393 0.93 4 19 0.00026 0.062 16.4 1.7 3 23 496 517 494 517 0.95 5 19 0.03 7.2 9.9 0.4 2 23 525 547 524 547 0.95 6 19 0.001 0.24 14.5 1.1 1 23 562 584 562 584 0.97 7 19 0.00022 0.052 16.6 0.1 3 23 589 609 588 609 0.97 8 19 2.4e-06 0.00056 22.8 1.9 2 23 633 654 632 654 0.95 9 19 0.029 7 9.9 0.5 2 23 713 734 712 734 0.97 10 19 0.0013 0.3 14.2 8.3 1 21 770 790 770 792 0.95 11 19 0.046 11 9.3 1.6 3 23 815 835 813 835 0.97 12 19 5.5e-05 0.013 18.5 0.4 1 23 857 879 857 879 0.98 13 19 0.0012 0.28 14.3 0.1 2 23 893 915 892 915 0.95 14 19 0.00043 0.1 15.7 1.0 1 23 931 953 931 953 0.94 15 19 0.0063 1.5 12.0 0.0 1 23 987 1010 987 1010 0.95 16 19 0.0081 1.9 11.7 1.1 2 23 1021 1042 1020 1042 0.97 17 19 0.00018 0.042 16.9 0.3 1 23 1053 1076 1053 1076 0.96 18 19 0.0007 0.17 15.0 1.4 1 23 1082 1104 1082 1104 0.98 19 19 0.0097 2.3 11.5 0.0 1 23 1125 1148 1125 1148 0.95
Sequence Information
- Coding Sequence
- ATGATCATTCAAAGATGTCATAAACACTCGTATTGTcgtatttataccaaaatagtttttgattgTACTAGTATACGAATTAAAGATGAAGTTTTGGACGAAAGTGATACTAATCCACATCCTGATATTACTGATGACGATAATgaaattcGTGTTAAAACCGAACCTATTGAAGCTATATATCACGTTGAGACTGAAATGGCCGACGATTCCTACGATTATCCACCACCACTTAGCCCGGAACAACTTGTCGAAACGTCGTTCGACCATGTTGAAATTGAAATGGACGGTAGCATTCAAATCATGAATGGCAGCGttacagaACTCCCAGAGAATGCACGTGTTTCGGCTGATGGTAAAAAGTGCTTAGCTTGTAACAAGGCGTTTACTACTATTGCTAACAGACAACGTCACGATGCAGTTTTTCACCGAGGGGTCAaaagaaaatatacaaaaagcCCAAAAGCGAAAATTGTGAAATCTCCTAAAAttgttgAACCAGTTCGAAAAGTGGTAAATGAAAATAACTTGAATGGTGAAGCCGAACTTCAAAAAATTCAGTTTGCTGCTGGATTACAATTGCAACAACGTACCGAAAATTCCGTTCCGATCGCATTAGAAGACATGGACTTAACAAAGGTAGAACAGAGTTATTTAGATAAATGTAAGACAATAATTACAATGACTGACACGTTAACATGCGTTTGTCACAAAGAACATTTTGACGAAGTTAGGGATTTacacatacatttaaaaaagcaaagacAATGGTTTGCTATGTTTACTTGCTATAACTGTTTAATTACTTATACCGAAAGATCCGCATATATGAAACATTTCTGCGGTTGTACAAAAGATTTACTTCATAATCTTAGACGTTTAACAGAATCTCCGGTTAACCCCGAAATTAAAATGCGTctgtatcaaaattataaatgcatTAGATGCAATTGCATATTTGGTTTTTACGAAGATTTTTGTAGTCATTTCGATGTAGAACATATGGAATTGTTACAAAATACTTCTCCGTATAAATGCTTCTGTTCTAAGACatttgaagaaatggaagaTTATAAACAACATTTACATATATCTtgttttttgcgttatttttgtgatgtttgtTTCGAAGTTTTTACTACTGTTGAGGATTTTAAAAATCACTGCGAAAACGAACACGATAATTCTGAACCCGGTACTTTATTACCGTTCGACCCTCTTATTAAACCTAAAGGTGGAAATGCTGCTCCAATTGAGCCAAAAATGACTAGACGATCTCTACCGGTTGAAAACGTTGCTAAACGAGCAATAGAGGATAATGGTCATTTAACTAGACGTCGAACGGCTAACGTACCTTCTTCGGAAAACTCCAGCCAAATTTCAGATGCAACTCTTGATTTAGAAGAAGAAGATCCTGACTATCTTCCGGATCTACCTAAGACAAATAATTCGGTTCCATCTTTAAAATCATCGAATCCTACAGCTTGTCCTAATTGCGGTAAAATGTATTCGACTTATCATAACATGTTGCGCCATTACAAGTTATCGCACGACGAAAGTGGAAAAATTCTTGAGTGTCGTTACTGTAACGAGAGGTTCCGTTTAATTACAGAATTAAAGGAACACGAAAGTACGGTACACGCAGACGACGACGATGAGGATTCTGAAGATGCTTCTTCTGAGTTCAATTGTACAGAGTGTGACATTACATTTAAAGATATGGAAAGTCGGTCGCGACACATGGAAAAACACCCTAAGAAGGCTTGTGATGAATGCgataaagaattttctacgcAGGTTGAGTTAGATCAACATAGAAGCgttcatttaaatattaaagtataCAGGGATTCGAAAACCAAGGATTATAAGAGTGCTATGGTTAGTCCTTCCCTTGTATGCGAAATTTGTGATAAAACGTTCTCAACTAAAAGCGAATTGCGACATCACAAACTACTACATGAAAAAATGCCTGTGCTTAGTGTTCAAGAAGGTAGTTTACTAGAGGAAAAAACTGATCTTAGCAAAAAATTTAGTTGCATTCCTTGTGATAAACACTATGTTAGTTACGGAGGAATTTGGGATCACAATAAGAAACATCATCCGACCAAGCAGATTACAGCAGAGTATCCTAAAAAATGTACGTTATGCCAGAAAGTACTAACTTCGCGTGGAGCATGGGTAAATCACGAGAAGATGCACGAACGGCTAGCGAACATGAAACAGGACATTGATGATGCTGGTCCGGTCCCAAAGATTACGAAGTACAGACCCATTAAAACAGATGACGATGACGAAGAATCATATCATACATGCAAAAGATGTTTCAAAGTATTTTCGAGTAAATATAATCTTAGAAATCACATGAAATGTCACGGGATTAATATAAATGCGAGTAGTAGAAGTAGCACCAAGACcggtaaaattataaaaacctaTTGGTGCAACATATGCCATCAAGCTTGTCCGGGTTATTCTGAATTACAAGACCACAAGCGTGAACATTTAAAATCGAAAGTAAGTAATGAAGACGAGGAGGCAGAAGTAGAAgataaaaaaccatttattttcGAATGCAACGAATGCTCGTTAACATTTGCAACTAGTTTTGCTTTAGCTCGACATCAAGagaaacacattaaaaaacacGAATCTTCTCAACAATTGGTATCcgtttattgtaaatattgtaaagtaCCATTCCCAAGCGTAAGTGACTTGAATGAACACATGGATAAGGATCACAGTGATATGGCTTCTAAACCAAAAGTGCAGACACCGGGAACTAAACATACCTGCAAATTATGCAAGAAGGTGTTTGATAACTCAGGAGCTTTGTCGTCTCATCAAGGTTGGCACAAACGAGTTAAGTTTAATAGAGTACGAGCTCAAGAACAATTAGTGAAGTCGATGGCAAAACGTGGTAATAAATCGTATACCCCTGAATCAACCGAATCATTTCCTTGTCCCACGTGTTCCATGGAATTTTCAAGCGATCCAAGTTTACAAATTCACATTTTAGAAGTTCACCGCAACATAAATGCTACACTTTTACTTATGAAATGTAATAGTTGCAAaatgagttttgaaaaaaaatccgCGTATGACATTCATATGCAATTACACAAACAAGTTGAAAGCAAAACTCCAAAAGCATTCCCTTGCAAGTATTGTCCTGCCGGCTTTAGCAAATCGGAAGGGTTGACTTTGCATATGAAGCAACAGCATAAAGACAGAATTGAGTTTAGATGTCAGCAATGTAACCGTTTGTTTGATAAGCAAAATGCCCTCACGGTGCACTTGAAAATGCACGAACGTCAAAGACTTGCAGGAGAAACTGCATCTCCTAAACCCATTCACAATAAGAATATTTATTTCTGCTCTATTTGCGATTTAGGATTTGCTATAGCCAAAGATCTACGCAACCATGTTGTTACTGCGCATCCATTTTGA
- Protein Sequence
- MIIQRCHKHSYCRIYTKIVFDCTSIRIKDEVLDESDTNPHPDITDDDNEIRVKTEPIEAIYHVETEMADDSYDYPPPLSPEQLVETSFDHVEIEMDGSIQIMNGSVTELPENARVSADGKKCLACNKAFTTIANRQRHDAVFHRGVKRKYTKSPKAKIVKSPKIVEPVRKVVNENNLNGEAELQKIQFAAGLQLQQRTENSVPIALEDMDLTKVEQSYLDKCKTIITMTDTLTCVCHKEHFDEVRDLHIHLKKQRQWFAMFTCYNCLITYTERSAYMKHFCGCTKDLLHNLRRLTESPVNPEIKMRLYQNYKCIRCNCIFGFYEDFCSHFDVEHMELLQNTSPYKCFCSKTFEEMEDYKQHLHISCFLRYFCDVCFEVFTTVEDFKNHCENEHDNSEPGTLLPFDPLIKPKGGNAAPIEPKMTRRSLPVENVAKRAIEDNGHLTRRRTANVPSSENSSQISDATLDLEEEDPDYLPDLPKTNNSVPSLKSSNPTACPNCGKMYSTYHNMLRHYKLSHDESGKILECRYCNERFRLITELKEHESTVHADDDDEDSEDASSEFNCTECDITFKDMESRSRHMEKHPKKACDECDKEFSTQVELDQHRSVHLNIKVYRDSKTKDYKSAMVSPSLVCEICDKTFSTKSELRHHKLLHEKMPVLSVQEGSLLEEKTDLSKKFSCIPCDKHYVSYGGIWDHNKKHHPTKQITAEYPKKCTLCQKVLTSRGAWVNHEKMHERLANMKQDIDDAGPVPKITKYRPIKTDDDDEESYHTCKRCFKVFSSKYNLRNHMKCHGININASSRSSTKTGKIIKTYWCNICHQACPGYSELQDHKREHLKSKVSNEDEEAEVEDKKPFIFECNECSLTFATSFALARHQEKHIKKHESSQQLVSVYCKYCKVPFPSVSDLNEHMDKDHSDMASKPKVQTPGTKHTCKLCKKVFDNSGALSSHQGWHKRVKFNRVRAQEQLVKSMAKRGNKSYTPESTESFPCPTCSMEFSSDPSLQIHILEVHRNINATLLLMKCNSCKMSFEKKSAYDIHMQLHKQVESKTPKAFPCKYCPAGFSKSEGLTLHMKQQHKDRIEFRCQQCNRLFDKQNALTVHLKMHERQRLAGETASPKPIHNKNIYFCSICDLGFAIAKDLRNHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004023;
- 90% Identity
- -
- 80% Identity
- -