Ater015282.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002663.1:1300862-1316862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.22 11 6.9 0.7 2 19 200 217 199 222 0.94 2 18 2 1e+02 3.9 1.9 1 20 342 361 342 363 0.94 3 18 0.16 8.2 7.3 1.5 1 19 451 469 451 474 0.93 4 18 6.5e-05 0.0033 18.0 1.4 3 23 573 594 571 594 0.95 5 18 0.022 1.1 10.0 1.3 1 23 637 659 637 659 0.98 6 18 0.0005 0.025 15.2 1.4 3 23 664 684 663 684 0.97 7 18 1.4e-05 0.00073 20.0 3.0 2 23 708 729 707 729 0.95 8 18 0.092 4.7 8.1 0.5 2 23 788 809 787 809 0.97 9 18 0.00039 0.02 15.5 7.9 1 21 844 864 844 866 0.95 10 18 0.098 5 8.0 1.0 3 23 889 909 887 909 0.97 11 18 0.00028 0.014 16.0 0.9 1 23 933 955 933 955 0.98 12 18 0.001 0.051 14.2 0.1 2 23 969 991 968 991 0.95 13 18 0.00054 0.027 15.1 0.3 1 23 1007 1029 1007 1029 0.94 14 18 0.012 0.64 10.8 0.0 1 23 1063 1086 1063 1086 0.95 15 18 0.0069 0.35 11.6 1.1 2 23 1097 1118 1096 1118 0.97 16 18 6e-05 0.003 18.1 0.3 1 23 1129 1152 1129 1152 0.96 17 18 0.00046 0.023 15.3 3.0 1 23 1158 1180 1158 1180 0.99 18 18 0.0084 0.43 11.3 0.0 1 23 1201 1224 1201 1224 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAACGCAGGTGGGGCAATTTTAGCTCCTGCTGTAGATTGTGTTTGTCGGAAAAGTTGGGTACGTTGAAGTCCATTTTTGAGGATGCAGCTGCATTTGGCAAAGATGTCGTGCTTAATATTCAAGAATGCGTTGGAGTTGAAattaaacACAGCGACAAATTATCCACCATGATTTGTGAAAAATGTACCGCACAAGTTAATGCTTGGCGACGTTTCAGAGACACTTGTTTTGAGAATCAATCGAAGTTAGTTGGATGGATGAACGATTGGACTTCTAGTGGCAGTGAAGAATTAAATGTGaGCATAAGAATTAAGGACGAAGTGTTGGATGAGAGCGATACTAACCCGCACGAAAATTCCATTGACGACGAAAGTaACGTTCATATTAAGAGTGAACCGATCGAAGCCATTTATCATGTTGAAACTGAAATGGCCGATGATACGTTCGATTATCCACCGCCGCTTACTCCAGAACAGCTTGTGGAAACGTCTTACGATCAGGTCGAAATCGAAATGGACGGTAGCATTCAAATCATGAACGGCAGTGTTTCGGAACTACCAGAAAATGCACGAGTTTCGGCTGatggtaaaaaatgtttatcgtGTAATAAGGCTTTTACCACCGTCGCCAACAGGCAACGTCACGACGCTGTCTTTCATCGGGGAGtcaaaagaaaatatcattCGAAAGGTGCGAAAGCAAAGCTCTCGAAAACTCCTAAGAttattCCTGAATCCCCCCGAATGACTTTGtacgaaaataatataaatggaGAAGCCGAGCTTCAAAAGATACAATTTGCCGCGGGATTGCAGTTACAACAACGCACCGAGAATTCCATTCCGATCGCGTTAGAAGACATGAGCttaacaaaaatagaacaaaGCTATTTAGATAAGTGCAAGACAATAATTTCAATGACCGATTCGCTTACGTGCGTTTGTCACAAGGAAAAATTCGATCAAGTTAAAGATTTGTACATTcatcttaaaaaacaaagacaatGGTTTGCGATGTTCACTTGCTACAACTGCTTAATTACGTACACCGAAAGATCGGCGTATATGAAACATTTCTGCGGGTGCTCCAAAGACCTTCTGCACAATCTTAGACGCTTAACCGAATCGCCGATTAACCCCGATATTAAAATGCGactatatcaaaattataaatgcatTCGATGcaattgcatttttggattttacgaAGATTTTTGCAGCCACTTTGATGTAGAACATATGGAATTGCTACAAAACTCGCCCCCTTACAAATGTTTGTGCGCGGAGACTTTTGAAGAAATGGAAGATTACAAACAGCACTTGCATATATCTTGTTTTTTGCGTTATTTCTGTGACgtctgttttgaagtttttactaCTGTCGATGAATTCAGAATTCACTGTGAAAATGAACACGATAATTCAGAACCCGGTACTTTGCTGCCGTTTGATCCTCTGTGTAAACCGAAAAATGGTCCAAATGTAGTACCGACGTCTAGGCGATCTTTACCAGAGGCTACTGCAAAACGGGACGAGGATAATCGTCTATTAACTCGACGTAGAACTATTAATATGCCATCGTCAGAAAATTCGAGTCAAGTTTCTGAGGCGACTCCAGATTTGGACGAAGAAGATCCTGATTATTTACCCGATGCTCCAAAACTTAATTCGACGACAACCCCTACTTTGAAGTCATCAAATCCTACGGCTTGTCCAGATTGTGGTAAAATGTATTCTACATACCATAATATGCTGCGGCATTACAAGTTGTCCCACGACGAAACTGGAAGAATTCTCGAATGTCGTTTTTGCAACGACAGATTTCGGTTGATTACAGAATTAAAGGAGCACGAAAGTAATGTGCACGCGGAAGATGATAGTTCCGCAGACAGTCCGTATAACTTTTCGTGTCCAGATTGTGGCGATACTTTCCAAGACATGGAAACATGTACTCGTCACATGGAAACACATCCGAAGAAAGCGTGCGACGAGTGCGATAAAGAATTTTGTACCCAACGCGAATTAGATCAACATAGAAGCGTACATTTGAATATAAAAGTTTATAGGGATTCAGAAACTAAAGATTATAAGAGTGCGATGGTTAGTCCTTCTCTTATGTGCGAAACTTGTGATAAAACGTTCTCGACGAAGAGCGAATTGCGTCATCATAAGCTGTTGCACGAGAAAATGCCTGTCCTCAGTGTTCAAGAAGGTAGtttgatagaagaaaaaattgatcttAGTAAGAAGTTTAGTTGCATACCTTGCGACAAGCATTACGTTAGTTATGGTGGAATTTGGGATCACAATAGGAAACATCATCCGAATAAACAGGTCGCCGCCGAGTATCCCAAAAAATGTTCATTGTGCTTCAAAGTGTTGACTTCGCGCGGAGCGTGGGTAAATCATGAGAAGATGCACGAACGGCTGGCAAACATGAAACAAGACATCGATGACACAGGTCCGTTGCAACGAACGTCAAAGTATAGACCTATTAAAACAGACGACGACGATGAATCATATCACACGTGTAAAAGatgttttaaagtattttctagCAAATCTAATCTTAGAAATCATATGAAATGTCATGGAATAAACATAAATGCTGGCAGTAGAAGCAGTACCAAGACTGGAAagattattaaaacttattggTGTAACATTTGCCATCAAGCATGTCCAGGCTATGCAGAATTGCAGGAACATAAGCGAGAACACTTAAGCGAAAAGAAAACTAACGTCAATAACGATGAGGAAGAGGAAGTTGAAGATCGAAAGCCACTTCCTTTCGAGTGCAACGAATGCTCGTTGAGATTTAGCACTACCTTTGGCCTAGCGCGGCACCAAGAGAAGCACACTAAAAAACACGAATCTTCTCAACAATTAGTGTCAGTGTACTGTAAGTACTGCAAGGTACCGTTCCCGAGCGTTAGCGATCTGAACGATCACATGGATAGAGATCACAGCGATATGGCTTCAAAGCCAAAGGTTCAGGCGCCTGGAATCAAACATGTTTGCAAGTTGTGCAAAAAGGTATTCGATAACGCTGGGGCGCTGTCATCGCACCAAGGTTGGCATAAAAGAGTTAAGTTTAATAGAGTTCGCGCTCAAGAGCAGTTGCTCAAATCGATGGctaaaaaaagtgcaaaatcgCCGAGTCCCGCAACATCTGAAACGTTTCCTTGTCCAACATGCTCAATGGAATTTCCGACAGATCCGAGCCTACAAATTCACATTCTGGAAGTTCACCGCAACATTAATGCAACTCTTTTACTTATGAAGTGTAACAGTTGCAAAAtgagttttgagaaaaaatcagCTTATGACATTCATATGCAATTACATAAACAGGTCGAAAGTAAGACACCTAAAGCGTTCCCATGCAAGTATTGCCCGGCTGGATTTAGCAAATCAGACGCATTAACTTTGCACATGAAACAGCAACACAAAGAATTCATCGAATATAGATGTCACCAGTGTAATCGATTGTTTGATAAGCAAAACGCTCTCACGGTCCATCTAAAGATGCACGAGCGTCAACGACTTGCTGGCGAAACGGCATCTCCCAAACCTATCCAcaacaaaaacatatatttcTGTTCGATTTGCGATTTAGGATTTGTTATAGCGAAAGACTTACGCAATCATGTTGTTACAGCACAtccgttttga
- Protein Sequence
- MSERRWGNFSSCCRLCLSEKLGTLKSIFEDAAAFGKDVVLNIQECVGVEIKHSDKLSTMICEKCTAQVNAWRRFRDTCFENQSKLVGWMNDWTSSGSEELNVSIRIKDEVLDESDTNPHENSIDDESNVHIKSEPIEAIYHVETEMADDTFDYPPPLTPEQLVETSYDQVEIEMDGSIQIMNGSVSELPENARVSADGKKCLSCNKAFTTVANRQRHDAVFHRGVKRKYHSKGAKAKLSKTPKIIPESPRMTLYENNINGEAELQKIQFAAGLQLQQRTENSIPIALEDMSLTKIEQSYLDKCKTIISMTDSLTCVCHKEKFDQVKDLYIHLKKQRQWFAMFTCYNCLITYTERSAYMKHFCGCSKDLLHNLRRLTESPINPDIKMRLYQNYKCIRCNCIFGFYEDFCSHFDVEHMELLQNSPPYKCLCAETFEEMEDYKQHLHISCFLRYFCDVCFEVFTTVDEFRIHCENEHDNSEPGTLLPFDPLCKPKNGPNVVPTSRRSLPEATAKRDEDNRLLTRRRTINMPSSENSSQVSEATPDLDEEDPDYLPDAPKLNSTTTPTLKSSNPTACPDCGKMYSTYHNMLRHYKLSHDETGRILECRFCNDRFRLITELKEHESNVHAEDDSSADSPYNFSCPDCGDTFQDMETCTRHMETHPKKACDECDKEFCTQRELDQHRSVHLNIKVYRDSETKDYKSAMVSPSLMCETCDKTFSTKSELRHHKLLHEKMPVLSVQEGSLIEEKIDLSKKFSCIPCDKHYVSYGGIWDHNRKHHPNKQVAAEYPKKCSLCFKVLTSRGAWVNHEKMHERLANMKQDIDDTGPLQRTSKYRPIKTDDDDESYHTCKRCFKVFSSKSNLRNHMKCHGININAGSRSSTKTGKIIKTYWCNICHQACPGYAELQEHKREHLSEKKTNVNNDEEEEVEDRKPLPFECNECSLRFSTTFGLARHQEKHTKKHESSQQLVSVYCKYCKVPFPSVSDLNDHMDRDHSDMASKPKVQAPGIKHVCKLCKKVFDNAGALSSHQGWHKRVKFNRVRAQEQLLKSMAKKSAKSPSPATSETFPCPTCSMEFPTDPSLQIHILEVHRNINATLLLMKCNSCKMSFEKKSAYDIHMQLHKQVESKTPKAFPCKYCPAGFSKSDALTLHMKQQHKEFIEYRCHQCNRLFDKQNALTVHLKMHERQRLAGETASPKPIHNKNIYFCSICDLGFVIAKDLRNHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153807;
- 90% Identity
- -
- 80% Identity
- -