Alei008111.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- su(Hw)
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:63501749-63505153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.031 17.4 0.8 3 23 141 162 140 162 0.94 2 13 0.0025 0.61 13.3 1.4 1 23 193 216 193 216 0.95 3 13 0.0023 0.56 13.4 0.1 2 23 223 244 222 244 0.97 4 13 0.00034 0.082 16.0 1.7 1 20 250 269 250 271 0.95 5 13 2.9e-07 6.9e-05 25.7 1.1 1 23 282 304 282 304 0.98 6 13 7.8e-05 0.019 18.0 0.4 2 23 315 336 314 336 0.97 7 13 1.3e-05 0.003 20.5 0.3 1 23 342 364 342 364 0.98 8 13 1.7e-05 0.0041 20.1 0.6 1 23 370 392 370 392 0.99 9 13 8e-05 0.019 18.0 2.7 1 23 398 420 398 420 0.94 10 13 0.00028 0.068 16.3 2.8 1 23 426 449 426 449 0.95 11 13 2.6e-06 0.00062 22.7 0.6 2 23 456 477 455 477 0.96 12 13 4.8e-06 0.0011 21.9 3.2 1 23 483 505 483 505 0.98 13 13 1.2e-05 0.0028 20.7 3.1 2 23 512 534 511 534 0.94
Sequence Information
- Coding Sequence
- ATGGACGTAGAAATGGATGCGATAAAGTCTGAGCAAATTTCTGTTAATTCAGAAATGGATGAAGTGAAAAcgactgttttaaaaaatatgactcTTATAGAACCCGTAAATTTAATATCGTCGGCGGAGCTGATGTTAATAGAAAATTCGGATGGCAACTTAGAAATAAACACAATTCGAACGTTTGAAGAACACAGAGAtGATGAAGCGGAAGAGATACCTGTTGAACAAGACAATGACGAAATAAACGACGAGTTTATCGAAGACGATTCTTTAATAGATTTAATGTCTAATAATGCGCCTGAAGAAGGAATGTCCGAGGAAGATGAACCTTTAACTGAAGATGATTATAATAATGATCCTACATATTTCGATAAACCGGAAGAATTAGCTGTGCAGAAAGTTGAAGAATCTAATCCTTGCACCTTGTGTGACCGGGAATTCAAAACAGCAGCTACATTAAAACGTCACGTTATAGTATGCCATGCTGTTGAAGAAGAGCAAGATGATCCTTTAACTTTTCAGTTATGTTTATGCTGCGGGGAGCCTGTTGATTCTGCTCATACAtttggAGATTTTAAATGCCTCTTGTgcgaaaaactgttttttacgCAAACGAGTTTAGAAAGACACAAAAGTATCGAACATTCGACAGGAAATATCTGGTCATGTCCGGAATGTAACGATACATTTGAAGAACGTACTCTTTTATTGGAACATATGCAAACACATCCATTAACCAAAGTGTTTTCATGTCGTCAATGTAATCGAGAGTTTACACGTAAATATCATCTTGATCGTCATGTCGCCCAAACTGGTTGTGATGGAACGCCAAGAAACCAATTTCAGTGTCAAGTATGTCAAAAGATATTTTCTCGCAAAGACAATTTAAGAGACCACTTACGAGGACATGCTGGagaaactaaacaaaagaaGTTAATTGAATGTCAATATTGCCAGAAGTCATTTCGTGGTACCGCCATGCTAGTTATGCATTTAAGAACACATACAGGTGAAAGGCCGTATGCTTGTGATTTGTGTCCAAAACGTTTTCCATCGAGTGGCGCAATGAAAAAGCATAGGAGAATGCATACTGGCGAGAAACCTTACGAATGTCCTAAGTGCTCTAATAAGTTTGCCGCAAAAGAAACACTTAACCGACATATTCGTACCCATACTGGTGACAGACCTCATGCTTGTCAATTCTGTGGTAAATCATTTATTCAAGCAACCCAGCTACGTGCACATATTTTCCATCACACTGGAGAAAATGCTTTTACGTGCACTTACTGCAACCGTGCATTCAACAGGCGTACTCGCCTTACAACACACGTTAAATTTGTTCACGAAGGTGCAAAACCGTTGGAGTGCGATCAGTGCGACAAAACGTTCTTTCGTAAAGAAGACCTTGCTAGGCATATAAAACTACATTCTGGATTGAAACCGTTTGAATGTGATACTTGTCACAAACGTTTTTCCATAAAATCTTCCTTAAAAATTCACATGTTGACTCATCGAAAGGAAAGACCGTGCAGTTGCGACGAATGTGGCAGGGCATTTATTCGTCAAGATTGTTTGTTGCGTCACATGCGCGCTAAGCATCGCGACGTCTTAGAAGACATAATGGCAGGggcagagaaaaaaagactacaACAGCAATTACTTACCGCTGCCTCTAACGCTGCCAAAAATGGAAATAAGATTTTAGCGGAGCACACTATTTGGAATGAACTTACGCTTACCGATTCTGTTAAAGAATTACTTACTTTACTTGTTGATGAAAGCACTTTGGAATCAATTGGTTGGCCGAATGCTCCTGTTGATAAATTACTTGATGCTGTAATTAAACGATGCGGGCATAAGCCAGCGTCCGAAGAAGATTTTGATTATATTGGTAGAATGCGTGAAAATgccaaacttttatttactgttGTAATTGATGATGAAGCTGTTAAATctcttttaaataatcaaactgTTGATGAAGTTattttgcatgttttaaaattagcaaaatcTGAATAA
- Protein Sequence
- MDVEMDAIKSEQISVNSEMDEVKTTVLKNMTLIEPVNLISSAELMLIENSDGNLEINTIRTFEEHRDDEAEEIPVEQDNDEINDEFIEDDSLIDLMSNNAPEEGMSEEDEPLTEDDYNNDPTYFDKPEELAVQKVEESNPCTLCDREFKTAATLKRHVIVCHAVEEEQDDPLTFQLCLCCGEPVDSAHTFGDFKCLLCEKLFFTQTSLERHKSIEHSTGNIWSCPECNDTFEERTLLLEHMQTHPLTKVFSCRQCNREFTRKYHLDRHVAQTGCDGTPRNQFQCQVCQKIFSRKDNLRDHLRGHAGETKQKKLIECQYCQKSFRGTAMLVMHLRTHTGERPYACDLCPKRFPSSGAMKKHRRMHTGEKPYECPKCSNKFAAKETLNRHIRTHTGDRPHACQFCGKSFIQATQLRAHIFHHTGENAFTCTYCNRAFNRRTRLTTHVKFVHEGAKPLECDQCDKTFFRKEDLARHIKLHSGLKPFECDTCHKRFSIKSSLKIHMLTHRKERPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDIMAGAEKKRLQQQLLTAASNAAKNGNKILAEHTIWNELTLTDSVKELLTLLVDESTLESIGWPNAPVDKLLDAVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLKLAKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003948;
- 90% Identity
- -
- 80% Identity
- -