Basic Information

Insect: Abscondita terminalis
Gene Symbol: su(Hw)
Assembly: GCA_013368085.1
Location: JABVZW010002884.1:1995357-1997762[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.0052 17.3 0.8 3 23 152 173 151 173 0.94

2 13 0.00067 0.034 14.8 0.6 1 23 204 227 204 227 0.96

3 13 0.0096 0.49 11.1 0.2 3 23 235 255 233 255 0.97

4 13 0.00012 0.0059 17.2 1.7 1 20 261 280 261 282 0.95

5 13 7.7e-08 3.9e-06 27.2 1.1 1 23 293 315 293 315 0.98

6 13 3e-05 0.0015 19.0 0.3 2 23 326 347 325 347 0.97

7 13 1e-05 0.00052 20.5 0.3 1 23 353 375 353 375 0.98

8 13 2.1e-05 0.0011 19.5 0.6 1 23 381 403 381 403 0.99

9 13 6.4e-05 0.0033 18.0 2.7 1 23 409 431 409 431 0.94

10 13 0.00023 0.012 16.3 2.8 1 23 437 460 437 460 0.95

11 13 4.6e-06 0.00024 21.6 0.8 2 23 467 488 466 488 0.96

12 13 3.7e-06 0.00019 21.9 1.2 1 23 494 516 494 516 0.98

13 13 9.3e-06 0.00047 20.6 3.1 2 23 523 545 522 545 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.0052	17.3	0.8	3	23	152	173	151	173	0.94
2	13	0.00067	0.034	14.8	0.6	1	23	204	227	204	227	0.96
3	13	0.0096	0.49	11.1	0.2	3	23	235	255	233	255	0.97
4	13	0.00012	0.0059	17.2	1.7	1	20	261	280	261	282	0.95
5	13	7.7e-08	3.9e-06	27.2	1.1	1	23	293	315	293	315	0.98
6	13	3e-05	0.0015	19.0	0.3	2	23	326	347	325	347	0.97
7	13	1e-05	0.00052	20.5	0.3	1	23	353	375	353	375	0.98
8	13	2.1e-05	0.0011	19.5	0.6	1	23	381	403	381	403	0.99
9	13	6.4e-05	0.0033	18.0	2.7	1	23	409	431	409	431	0.94
10	13	0.00023	0.012	16.3	2.8	1	23	437	460	437	460	0.95
11	13	4.6e-06	0.00024	21.6	0.8	2	23	467	488	466	488	0.96
12	13	3.7e-06	0.00019	21.9	1.2	1	23	494	516	494	516	0.98
13	13	9.3e-06	0.00047	20.6	3.1	2	23	523	545	522	545	0.94

Sequence Information

Coding Sequence: ATGGATTCGACGTCGAGGATGATTAAGTCAGAAATAATTTCTGATAATGCAGAAATGGATGAGGTTAAaacaacagttttgaaaaatatgaccATTATGGAACCTGATAATTTAATGACGGCAGAAGAATTGATGTTAATAGAAAATTCCGACGGCAACTTGGAAATCAACACTATTCAAAGCTTCGAAGAAGAGCATACAGAAGAAAATGAAACCATACCTATTGAACGAGACGAGgtagaacaagaagaagaagtagCAGATGAAGACGTTGACGATCAAGGGTTCATGGAGGATGATTCTTTAATGGATTTAATGTCTAACAGTGCCCAAGAAGGAGTTATTGGTGAAGAAGATGAAATCTTAACTGAAGACGACGATTACAATAATGATTCcacatattttgataaaactgaTGATATTTCTGAGAAGAAAGTTGAGGAGTCTAATCCTTGCACTTTATGCGATCGAGAATTTAAAACAGCAGCTactTTAAAACGTCATGTCATAGTTTGTCACTCCATTGAAGAGGAGCAGGACGATCCCTTAACTTTTCAACTGTGTTTATGCTGTGGGGAACCAGTAGATTCAGCTCATACAagtGGGGATTATAAGTGCGATTTATGCGAGAAATTGTTTTTCTCTCCAATGAACTTATTACGACACAAAAGCATTGAGCATATCAAGGGAGACGTTTGGGCTTGTTCAGAGTGCGATAATACGTTTCTTGAACGATCTCTTTTATTGGAACACATGCAAACGCATCCGCTGATTAAAGCATTTTCTTGCCGTCAATGCAATCGCGAATTTACCCGCAAATATCATCTTGATCGACACATTGCACAAACAGGATGTAACGGAACTCCGAGAAATGAATTCCAATGCCAAGTTTGTCAGAAAGTGTTTTCTCGCAAAGACAACCTGAGGGATCATTTGCGAGCACACGCtggagaaattaaaaagaagaaattaatcgAATGCCAATATTGTAAAAAGGCATTTCGCGGTTCGGCCATGCTTGTCATGCATTTACGAACTCATACGGGTGAAAAACCATACGCTTGTGATTTGTGCCCAAAACGTTTCCCTTCTAGCGGAGCTATGAAAAAACATCGAAGAATGCACACCGGTGAGAAACCCTACGAATGTCCAAAGTGCTCCAGTAAATTTGCCGCAAAAGAGACTCTCAACAGACACATTCGTACCCATACTGGCGATAGACCTCACGCTTGTCAGTTTTGCGGCAAATCGTTCATTCAAGCAACTCAACTGCGTGCTCATATTTTTcatcacacaggagaaaatgcTTTTACGTGCACATATTGCAACCGGGCGTTCAACAGACGCACTCGGCTGACAACTCACGTAAAGTTTGTTCACGAAGGGGCCAAACCAATGGAATGCGATCAATGTGATAAAACTTTCTTCCGTAAAGAAGATCTTGCTAGGCATTTGAAACTTCATTCTGGACTAAAGCCATTTGAATGTGGCACATGtcaaaaacgtttttccatCAAATCATCCTTAAAGATTCACATGTTGACTCATCGAAAGGAAAGACCATGCAGTTGCGACGAATGTGGAAGAGCGTTTATTCGTCAAGATTGCTTACTGCGTCACATGCGAGCTAAGCATCGCGAAGTTTTGGAGGATATATTAGCGGGGGCGGAAAAGAAGAGGCTACAGCAGCAGTTGCTTAATGCCGCTACTACCGCGGCCAAAAACGGAAACAAGAGTTTAACAGAACACACCATTTGGAACGAATTAACTCTAACTGATTCGATTAAGGAATTGCTTACTTTGCTTGTTGATGAAACTACTTTGGAATCTATAGGTTGGCCAAACGCACCCGTCGATAAATTGTTAGACGCAGTAATTAAGCGATGTGGACATAAGCCGGCGTCTGAAGATGACTTCGATTACATCGGTAGAATGAGAGAGAatgcaaaattgttatttactgTTGTAATCGACGACGAAGCTGTTAAATCTCTTTTAAACAACCAAACTGTCGACGAAGTAATCTTGCACGTTTTAAAGCTCGCAAAATCTGAATGA
Protein Sequence: MDSTSRMIKSEIISDNAEMDEVKTTVLKNMTIMEPDNLMTAEELMLIENSDGNLEINTIQSFEEEHTEENETIPIERDEVEQEEEVADEDVDDQGFMEDDSLMDLMSNSAQEGVIGEEDEILTEDDDYNNDSTYFDKTDDISEKKVEESNPCTLCDREFKTAATLKRHVIVCHSIEEEQDDPLTFQLCLCCGEPVDSAHTSGDYKCDLCEKLFFSPMNLLRHKSIEHIKGDVWACSECDNTFLERSLLLEHMQTHPLIKAFSCRQCNREFTRKYHLDRHIAQTGCNGTPRNEFQCQVCQKVFSRKDNLRDHLRAHAGEIKKKKLIECQYCKKAFRGSAMLVMHLRTHTGEKPYACDLCPKRFPSSGAMKKHRRMHTGEKPYECPKCSSKFAAKETLNRHIRTHTGDRPHACQFCGKSFIQATQLRAHIFHHTGENAFTCTYCNRAFNRRTRLTTHVKFVHEGAKPMECDQCDKTFFRKEDLARHLKLHSGLKPFECGTCQKRFSIKSSLKIHMLTHRKERPCSCDECGRAFIRQDCLLRHMRAKHREVLEDILAGAEKKRLQQQLLNAATTAAKNGNKSLTEHTIWNELTLTDSIKELLTLLVDETTLESIGWPNAPVDKLLDAVIKRCGHKPASEDDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLKLAKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00153747; iTF_00003200;
90% Identity: -
80% Identity: -