Alei054553.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:21108390-21112641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.3e-05 0.017 18.1 2.3 1 23 144 166 144 166 0.98 2 14 0.0013 0.32 14.2 5.8 2 23 173 194 173 194 0.97 3 14 0.027 6.4 10.1 1.0 1 23 204 226 204 226 0.93 4 14 0.00096 0.23 14.6 3.6 2 23 298 320 297 320 0.96 5 14 9.7e-05 0.023 17.8 5.1 1 23 380 402 380 402 0.96 6 14 6.4e-05 0.015 18.3 4.6 2 23 409 430 409 431 0.95 7 14 4.7e-06 0.0011 21.9 1.1 1 23 436 458 436 458 0.98 8 14 3.8e-06 0.0009 22.2 1.6 1 23 468 490 468 490 0.98 9 14 4.1e-07 9.9e-05 25.2 0.9 1 23 497 519 497 519 0.97 10 14 2.8e-06 0.00066 22.6 1.6 3 23 531 551 529 551 0.96 11 14 0.0013 0.31 14.2 5.3 1 23 557 579 557 579 0.99 12 14 5.4e-05 0.013 18.6 1.7 1 23 585 607 585 607 0.96 13 14 3.6e-07 8.7e-05 25.4 0.5 1 23 613 635 613 635 0.99 14 14 0.0003 0.072 16.2 0.1 1 23 641 665 641 665 0.92
Sequence Information
- Coding Sequence
- ATGATTGAACAAATAgataaactaataaacaaagATACTCaattaattatgcaaaaaatttgtCGGTCGTGCATGTGCGAAAGTACCGAAATGCgaaatgtttttgaaactaAAGAAGCTGAAGAAGGCGAAATCCAGCTTGCAGAAATGTTAATGGCTTGTACCTCGATACAAATAATGTCCGGGGATGGTCTACCCGTGCAGTTATGCATTTCCTGTGAAACGAAGCTTGATTCGGCTTTCGAGTTTAAACAACAATGTCAAAAGACTGATACTGCTTTAAGAGAACTTACAAATCAGCGAACTTCAAAAAATTCTATCAAACAAGAAGTGATTCAAGCTGATTTGTGTGGTACTTACAATAACCAGCTTGGAGATTCCGATGGTAGTGAAACACAAGCAAAAGTAAAATCCATAGATTCTAATGTATTTACTTGTACATATTGTCAGAAAGTTTTACGTACTAAAAAGGGTTTAAAAATACACGAACGAAGACACACCGGGGAAAAGTTACGTTCTTGTCATTTGTGTCAAGCAAAATTTACAAGAACCAATCATTTGAGACGACATATAGAAACGCACAATAAATCTAATGTAACTTCGACCAATTATATTTGTATCGAGTGCGGAGCTACTTTTACTAAAGcatgttatttaattaatcataaGAAAGAACATAATTTAGGCAACGTTAAAAAAGAACTGGATGCCGAGTTTGAGGTTTCTCATAGTAACGAGGACGATTACGAAAGTACTTCTAAGTATGGAGATGATGCATGGATTGAATGGAAGGAGGAGTTTGCGGAAACTATTATCAAACAAAAGAATGAATCAGATATGttaaaacagaaagaaaatgataaacCCATTGATAAGGATAAGAAGATAATGGAGTGTGAATTTTGTGATCGtaaatttaagtacaaaaagagCTTTGTGCATCACTTACAAACTGAACATGGAATGTCCGATGAGAGTGATGCTATAATCGCGAGTAGTATATCCAAAATAAAGAACATTAAAAATGAGTCAACTGATAGTCACGAAATAGAAGATCCACatgatttaaaagatttaacaaATCCTGATAACTCTGATGATGGCTTAGACGAAATGGACTTCGTACTTAGAAAACTCCATATTTGTCATGTATGTGATGCCAAATTCACGCGTGCTAATCATTTAACCAGACACATGACTTTACATCGCGCGGTACTCACCGAAAAATGCGATAAATGTGATAAAGCTTTTTCCACGACTGAACACTTGACGAAACATGTTCAAGAACATCACATTGATAGGCCGTATATTTGTACATTATGTGACAAGCCGTTTAGTCGAGGGGAACATCTTATGAGGCATTTAAAAGTGCACAATCACAGTCAGGGACCGCAAGAGACTCATAAGTGTTCAATTTGTGAGAAAGAATTTACTCGGCCTGAGTATTTAGCGCGGCATACAAAAGTTCATTTACAACAAGACAAGAGGCATATTTGTGCTGAATGTGGAAAGGCGTTTAATcgattagataatttaaaaacgcatcAGAGGGTTCATGCAGGTTTGAAGGATAATTCCAGGTTACACTTGTGTGTTTATTGTGGCAAAGAGTTTAATAATTCCAGTAATATGATTGTGCACATGCGTCGTCACACCGGGGAACGGCCTTATAAATGTACTATATGCAGCAAAGGGTTTCCAAGGTCGCATGACTTGAAGTGTCACGAACGTACGCATTCGGGAGAAAAACCTTATTTGTGTACGTTATGTGGAAAGTCTTTCAACAAAAGCAACAAATTATTACGACATTCGAGGGTGCACACCGGCGAAAGACCGTACGTGTGTAATTTATGCGGCCGAGCATTTACTCAATCCAACGACTTATCCCTTCACATGCGAAGACACACAGGTTCGCGTCCTTATGCATGCGGCGTATGCCCGGCACGTTTCATACAATCCGGTCAATTGAAAGCTCACCGAAGGTCAACAGGACACTGGATGGAAACGCAGCCTGATTTAAAAGGTGGTCACAGAGTAGAGCCGGTAACACCCGTAGTAAATCCGACACCGATCAAATTCAAAACGCACGGTAAAACGAAATGTAAAGAAGACGAAGATTACGAAACTAAAGAACCGCCGAGAATTTTGAGTCACACTGTTGGAATTATGGGCAACGTTAATATACAAACTGATAACTTGCAGCAATcgcaaccgattataattgatagtacaaaattaattcaacaaTTCCACAACGGTGGTTTCGTCGGTTTTACGTCGGTCATCAATGCTGGAGCTCAAGTAGTAGAAGAAAACGATAAGTTTAAAAGTGAAATTCAAACGTATAGTGTAACGGACGTGGCACGAGAAGTTCATGTCGGAGTTGAGAAAATGGAGCTACCCGAAGAAAACGATGTTAGTTTTTCGACAATAGCTACAGCAGCCGATACCGCTTTTAGTAACGTCGAGCgttataattatcaaaattatggGTAG
- Protein Sequence
- MIEQIDKLINKDTQLIMQKICRSCMCESTEMRNVFETKEAEEGEIQLAEMLMACTSIQIMSGDGLPVQLCISCETKLDSAFEFKQQCQKTDTALRELTNQRTSKNSIKQEVIQADLCGTYNNQLGDSDGSETQAKVKSIDSNVFTCTYCQKVLRTKKGLKIHERRHTGEKLRSCHLCQAKFTRTNHLRRHIETHNKSNVTSTNYICIECGATFTKACYLINHKKEHNLGNVKKELDAEFEVSHSNEDDYESTSKYGDDAWIEWKEEFAETIIKQKNESDMLKQKENDKPIDKDKKIMECEFCDRKFKYKKSFVHHLQTEHGMSDESDAIIASSISKIKNIKNESTDSHEIEDPHDLKDLTNPDNSDDGLDEMDFVLRKLHICHVCDAKFTRANHLTRHMTLHRAVLTEKCDKCDKAFSTTEHLTKHVQEHHIDRPYICTLCDKPFSRGEHLMRHLKVHNHSQGPQETHKCSICEKEFTRPEYLARHTKVHLQQDKRHICAECGKAFNRLDNLKTHQRVHAGLKDNSRLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCTICSKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNLCGRAFTQSNDLSLHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVVNPTPIKFKTHGKTKCKEDEDYETKEPPRILSHTVGIMGNVNIQTDNLQQSQPIIIDSTKLIQQFHNGGFVGFTSVINAGAQVVEENDKFKSEIQTYSVTDVAREVHVGVEKMELPEENDVSFSTIATAADTAFSNVERYNYQNYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151832;
- 90% Identity
- iTF_00151832;
- 80% Identity
- -