Alat000420.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:1609472-1613399[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5e-05 0.0007 18.1 2.3 1 23 148 170 148 170 0.98 2 14 0.00027 0.013 14.2 5.8 2 23 177 198 177 198 0.97 3 14 0.0054 0.26 10.1 1.0 1 23 208 230 208 230 0.93 4 14 0.00011 0.0055 15.3 3.7 2 23 302 324 301 324 0.96 5 14 2e-05 0.00093 17.7 5.1 1 23 386 408 386 408 0.96 6 14 2e-05 0.00094 17.7 3.8 2 23 415 436 415 437 0.95 7 14 9.5e-07 4.5e-05 21.9 1.1 1 23 442 464 442 464 0.98 8 14 7.6e-07 3.6e-05 22.2 1.6 1 23 474 496 474 496 0.98 9 14 8.4e-08 4e-06 25.2 0.9 1 23 503 525 503 525 0.97 10 14 5.6e-07 2.6e-05 22.6 1.6 3 23 537 557 535 557 0.96 11 14 0.00011 0.005 15.4 5.2 1 23 563 585 563 585 0.99 12 14 1.1e-05 0.00052 18.5 1.7 1 23 591 613 591 613 0.96 13 14 5.9e-08 2.8e-06 25.7 0.3 1 23 619 641 619 641 0.99 14 14 6.1e-05 0.0029 16.2 0.1 1 23 647 671 647 671 0.92
Sequence Information
- Coding Sequence
- ATGATTGAACAAATAGACAAACTCATAAACAAAGATACTCAATTAATTATGCAAAAAATTTGTCGGTCGTGCATGTGTGAAAGTACCGAAATGCGAAATGTTTTTGAAACTAAAGAAGCTGAAGAAGGCGAAATACAGCTTGCGGAAATGTTAATGGCTTGTACTTCGATACAAATAATGTCCGGGGATGGACTACCAGTACAGTTATGCATTTCTTGTGAAACGAAGCTTGATTCAGCTTTCGAGTTTAAACAGCAATGTCAAAAGACTGATACTGCTTTAAGAGAACTTACAAATCAGCGAACTTCAAAAAATTCTATTAAACAAGAATCGTTAGAAGTGATTCAAGCTGATTTATGTGGTACTTACGATAACCAGGCTGGAGATTCCGATGGCAGTAGTGAAATACAACCAAAAGGAAAATCTATAGATTCTACTGTATTTACATGTACATATTGTCAGAAAGTTTTACGTACAAAAAAGGGTCTGAAAATACACGAACGAAGACATACAGGGGAAAAGTTACGTTCTTGTCATTTGTGTCAAGCAAAATTTACAAGAACCAATCATTTGAGACGACATATAGAAACGCACAATAAATCTAATTTAGCTTCCACAAATTATATCTGTATTGAGTGTGGAGCTACCTTTACTAAAGCGTGTTATTTAATTAATCATAAAAAAGAACATAATGTATCGAATGTTAAAAAAGAAATGGATGGTGAATTTGAGGTTTCTCATAGTAATGAAGATGATTATGATAGTACTTCTAAGTATGGAGATGACACCTGGATTGAATGGAAAGAGGAGTTTGCGGAAACTATAATGAAACAAAAGAATGAATCAGATGTGTTAAAACAAAAAGAAAATGACAAACCCATTGATAAGGATAAGAAGATAATGGAGTGTGAATTTTGTGATCGGAAATTTAAATACAAAAAGAGCTTTATCCATCACTTACAAACTGAACATGGAATGTCTGATGAGAGCGATGCTATAATAACCAGTAGTATAACTAAAATAAGGAACATTAAGAATGAGTCAACTGATAGCCATGAAATAGAAGTTTCAGATCCACATGATTTAAAAGACTTAACAAATCCTGATAACTCCGACGATGGTTTAGACGAGATGGATTTCGTACTTAGAAAACTCCATATTTGCCATGTATGTGATGCCAAATTCACGCGTGCTAATCATTTAACTCGACACATGACTTTACATCGTGCGGTACTCACCGAAAAATGCGATAAATGTGATAAAGCTTTTGCCACGACTGAACACTTGACGAAACATGTTCAAGAACACCATATTGATAGGCCGTATATTTGCACATTATGCGACAAGCCGTTTAGTCGGGGGGAACATCTTATGAGGCATTTAAAAGTGCACAATCATAGTCAGGGACCAGCAGAGACTCATAAGTGTTCAATTTGTGAGAAAGAATTTACTCGGCCCGAATATTTAGCGCGCCATACAAAGGTGCATTTACAACAAGACAAGAGGCACATTTGTGCTGAATGTGGAAAGGCTTTCAATCGATTAGATAATTTAAAAACGCACCAGAGGGTTCATGCAGGGTTGAAGGATAATTCCAGATTACACTTATGTGTTTATTGTGGTAAAGAATTTAATAATTCCAGTAACATGATTGTCCACATGCGGCGCCACACTGGAGAACGTCCTTATAAATGTAGTATATGCAACAAAGGATTTCCCAGATCGCATGACTTGAAATGCCACGAACGGACGCATTCGGGTGAAAAACCATATTTATGTACGTTATGTGGGAAGTCTTTTAACAAGAGCAACAAATTATTACGACATTCGAGGGTACACACGGGCGAAAGGCCTTATGTGTGTAATTTATGCGGCCGCGCATTTACTCAGTCCAACGATTTAGCCCTTCACATGCGTAGACACACAGGTTCACGTCCTTATGCATGTGGCGTATGCCCGGCACGTTTCATACAATCTGGTCAATTAAAAGCTCACCGAAGGTCAACAGGACACTGGATGGAAACGCAGCCGGATTTAAAAGGTGGTCACAGAGTAGAGCCGGTAACGCCCGTAGTAAATCCAACACCAATCAAATTCAAAACGCACGGTAAAACGAAATGTAAAGAAGACGACGATTATGAAACTAAAGAATCACCGAGAATTTTGAGTCACACTGTAGGAATTATGGGCAATGTTAATATACAAACTGATGATATACCGCCTATTATAATTGATAGTACAAAATTAATTCAACAGTTCCACAATGGTGGTTTTGTCGGTTTTACGTCGGTCATCAATGCTGGGTCTCAAGTAGTAGAAGAAAACAATAAGTTTAAAAGTGAAATTCAAACGTATAGTGTAACGGACGTACCACAACGAGAAGTTCATGTGGGAGTAGAAAAAATGGAGCTACCGGAAGAAAACAATGTTAGTTTTTCGACAATAACTACAGCCGGTACGGCTGCTTTTAGTAATGTCGAACGTTATAATTATCAAAATTATGGGTAG
- Protein Sequence
- MIEQIDKLINKDTQLIMQKICRSCMCESTEMRNVFETKEAEEGEIQLAEMLMACTSIQIMSGDGLPVQLCISCETKLDSAFEFKQQCQKTDTALRELTNQRTSKNSIKQESLEVIQADLCGTYDNQAGDSDGSSEIQPKGKSIDSTVFTCTYCQKVLRTKKGLKIHERRHTGEKLRSCHLCQAKFTRTNHLRRHIETHNKSNLASTNYICIECGATFTKACYLINHKKEHNVSNVKKEMDGEFEVSHSNEDDYDSTSKYGDDTWIEWKEEFAETIMKQKNESDVLKQKENDKPIDKDKKIMECEFCDRKFKYKKSFIHHLQTEHGMSDESDAIITSSITKIRNIKNESTDSHEIEVSDPHDLKDLTNPDNSDDGLDEMDFVLRKLHICHVCDAKFTRANHLTRHMTLHRAVLTEKCDKCDKAFATTEHLTKHVQEHHIDRPYICTLCDKPFSRGEHLMRHLKVHNHSQGPAETHKCSICEKEFTRPEYLARHTKVHLQQDKRHICAECGKAFNRLDNLKTHQRVHAGLKDNSRLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCSICNKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVVNPTPIKFKTHGKTKCKEDDDYETKESPRILSHTVGIMGNVNIQTDDIPPIIIDSTKLIQQFHNGGFVGFTSVINAGSQVVEENNKFKSEIQTYSVTDVPQREVHVGVEKMELPEENNVSFSTITTAGTAAFSNVERYNYQNYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153741;
- 90% Identity
- iTF_00153741;
- 80% Identity
- -