Alei094547.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069437.1:67536192-67560684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00017 0.04 17.0 2.4 1 23 414 436 414 436 0.97 2 18 5.1e-05 0.012 18.6 1.8 1 20 442 461 442 464 0.94 3 18 2.9e-05 0.007 19.4 0.8 1 23 470 492 470 492 0.98 4 18 9.1e-05 0.022 17.8 4.4 1 21 498 518 498 520 0.95 5 18 5.1e-05 0.012 18.6 4.6 1 23 526 548 526 548 0.99 6 18 4.8e-05 0.012 18.7 5.3 1 23 554 576 554 576 0.97 7 18 8.1e-06 0.0019 21.1 7.2 1 23 582 604 582 604 0.97 8 18 1.9e-07 4.5e-05 26.3 2.7 1 23 610 632 610 632 0.98 9 18 0.00014 0.033 17.3 6.7 1 23 638 660 638 660 0.97 10 18 5.2e-05 0.013 18.6 4.5 1 23 666 688 666 688 0.97 11 18 8.9e-07 0.00021 24.2 2.8 1 23 694 716 694 716 0.98 12 18 1.3e-05 0.003 20.5 7.9 1 23 722 744 722 744 0.98 13 18 1e-05 0.0025 20.8 8.9 1 23 750 772 750 772 0.98 14 18 3.2e-05 0.0078 19.2 7.7 1 23 778 800 778 800 0.98 15 18 0.0001 0.024 17.7 7.0 1 23 806 828 806 828 0.96 16 18 9.8e-05 0.024 17.7 0.8 1 23 834 856 834 856 0.98 17 18 0.049 12 9.2 5.1 1 23 866 888 866 888 0.98 18 18 1.3e-06 0.0003 23.7 0.8 1 23 894 916 894 916 0.96
Sequence Information
- Coding Sequence
- atgagTTCGAACGAACAGAACCATTACAATGGACCTCAGTCCCAGACTGATAATTCTGatgTTAGTACTCAGCGACCACCGCCTGCAACATCTGTACCAACCGATCTTCGTGTTAATACTACAGCTTTGAATGCAGTCGCATTAAGTAGTGTTGCGAAATATTGGGttcttacaaatttattacCAGGGCCGATACCGCAGGTTTCTGTCTATGGCCTACCTACTTCAGGACGTGATGGCCAAACTAAAATGTCGCAGgagGCCATGCTAAGCCAACACGGCGGACTTCTACAAGCTGATCCGTTGCTTTTACAACAACACGCTCAAATACCAGTTAGTATATCGACTTCTCAAGGCATCACCAATTTAGCAATTCCAGCAAATGCGATGCATTTAGAAAATACGCAAAATCATCAGGCGTTGTCCAACCATCAACACAATGAAGGTCAAGTTATAGTTAATCCGTCTCAAACTCAACTCACTCATGCACAGTTACAAAATGCCCAAAATCACACACAGCAGTCGCAACAAAATATTGTACAAGTACAGGTACAAGATAATTTAGTTTCTGTGATTGAAGATAGTAAAGATCACAAAGACTTGATAGCATCTCAACTGGCTCAAGCTCAAATACATTTGAACGAAAATCAACAGTTAAGCCAACAGACACTGACCGTGCAGCAATTGCAGCATTTGCAAGTACAGCAAGTATTAGATAATGTGGTACGGATGGAAGCTGGCGTCGAAAATGGCCAAAATCATTCGGAACAAGATGGTTTAACTGGCACCGATGGTTTACCAATTATAAAAGATGAAAAGGGTTTGCAAAACTGTACAAAGTTGCTTGGAGCACAGTTTGGTTTGCAAGAtactaaaactaatttgatGGACATACGAACCGTAGATGGAAGTATAGTCAAGATAGCAGCGGGTATACAGGACCAAGATTTAGCAAAAACTTTAGGTGTCGAAATGGTGCAAAACATGTACAAAGTTAATGTAGACGATATTAATCAATTACTTGCATATCACGAAGTATTTGGGAAATTACAGGGTGAAATTAATACCGGACAAACAAACGTTTCTACTAATAacgcaaatttaaatttgcaacaaaCTGCGAACGCAATTGCAAGCAACATTCAAATTGTAACTCCTAAAACGATAACGGAGAATGATCAAGAAGCAACGACAAGCGCAATTGCCGCCGATAGTCCTCCCGCTATTATCGCTGGAAATCACGTCTGTGATTTGTGCGGCAAAATGTTTCAATTCCGATATCAATTGATTGTACATAGAAGGTATCATACCGAAAGAAAACCATTTACGTGCCAAGTTTGCGGAAAAGCTTTTACTAATGCTCAGGAACTTACGCGACATGGAAAATGTCACTTAGGTGGAAGTATGTTTACTTGTGCAGTATGTTTTCACGTTTTTGCAAACGCCGCTTCGTTGGAAAGGCATATGAAAAGACATTCTACTGATAAACCTTACAACTGTACAATTTGTGGAAAATCTTTTGCTCGAAAGGAGCATTTAGATAATCACACTAGATGTCATACGGGCGAAACTCCCTATAGGTGCCAGTATTGTGCTAAGACGTTCACTAGGAAGGAACACATGGTGAATCATGTGCGAAAACATACAgGTGAAACGCCACATAGATGTGAAATCTGCAAGAAATCGTTTACAAGAAAAGAACACTTTATGAACCATGTGATGTGGCACACTGGCGAAACTCCACACCATTGTACTATTTGTGGTAAAAAGTATACTAGGAAAGAGCATTTGGCAAATCATATGCGATCTCATACAAACGACACGCCATTTAGGTGCGAGATTTGCGGAAAATCTTTCACCAGAAAAGAACATTTTACAAATCACATAATGTGGCATACTGGCGAAACGCCTCATAGGTGcgatttttgttcaaaaacgtTCACCAGGAAGGAACATTTATTGAATCACGTCCGTCAGCACACAGGAGAATCGCCACATCGATGCGCGTATTGTGCAAAATCGTTTACACGCAAAGAGCATCTTATTAACCACGTTAGACAGCACACGGGTGAAACTCCGTTTCGTTGCAGTTATTGTCCTAAAGCGTTTACTAGAAAAGATCATTTGGTTAATCACGTACGACAGCACACGGGCGAATCTCCTCATAAATGTACATATTGCACAAAATCGTTTACGAGGAAAGAGCATTTAACAAACCACGTGCGACAACACACTGGCGAATCTCCCCATCGTTGCCATTActgttctaaatcatttacaagAAAAGAACATTTAACGAATCACGTGCGTATTCACACAGGCGAATCGCCGCATCGTTGCGAATTTTGCCAGAAAACTTTTACCAGAAAGGAACATTTGACTAATCACTTGCGTCAGCACACAGGCGAAACCCCGCATTGTTGCGAGGTGTGTTTTAAACCGTTTACTCGAAAGGAGCATTTAGTGAATCACATGAGATCACACACCGGTGAACGTCCGTTTTCATGCACCGAATGTGGAAAATCGTTTCCTTTGAAAGGTAATTTATTATTCCATCAACGGTCTCACAATAAAGGCGCCGATGCAGATAGACCATTTAGATGTGATCTTTGTGATAAGGACTTCATGTGTAAAGGTCATTTAGTGTCGCATAGAAGGTCGCACACTGGGGAACGCCCACATGCGTGTCCGGATTGTGGTAAAACCTTTGTGGAAAAGGGAAATATGCTGCGGCATTTGCGCAGACATACTATCGAAAATGGTCAAACACAAACGGTGAATCAGGTTGCGACTAATTCAGTTGTAACCAACCAGGCGCAGGTACAAACCAATCCTCCACCTGTGCAAACTTCAACTTCAACTACTATTCAAATTCCACAAGTTAGTCAAAGTCAAGCGTTAACAAGTACTGTGTCGACTGCAAACATCGTAAGTACAGGGAATATCGTACAACAGACACATATACCGATACACCAACAAAATAATCACCCCGTTGTTCCTGCTCCTAATTCGAGTATTTTAGCTTCGTACTCATAG
- Protein Sequence
- MSSNEQNHYNGPQSQTDNSDVSTQRPPPATSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTSGRDGQTKMSQEAMLSQHGGLLQADPLLLQQHAQIPVSISTSQGITNLAIPANAMHLENTQNHQALSNHQHNEGQVIVNPSQTQLTHAQLQNAQNHTQQSQQNIVQVQVQDNLVSVIEDSKDHKDLIASQLAQAQIHLNENQQLSQQTLTVQQLQHLQVQQVLDNVVRMEAGVENGQNHSEQDGLTGTDGLPIIKDEKGLQNCTKLLGAQFGLQDTKTNLMDIRTVDGSIVKIAAGIQDQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQGEINTGQTNVSTNNANLNLQQTANAIASNIQIVTPKTITENDQEATTSAIAADSPPAIIAGNHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCAKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCEVCFKPFTRKEHLVNHMRSHTGERPFSCTECGKSFPLKGNLLFHQRSHNKGADADRPFRCDLCDKDFMCKGHLVSHRRSHTGERPHACPDCGKTFVEKGNMLRHLRRHTIENGQTQTVNQVATNSVVTNQAQVQTNPPPVQTSTSTTIQIPQVSQSQALTSTVSTANIVSTGNIVQQTHIPIHQQNNHPVVPAPNSSILASYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003178;
- 90% Identity
- iTF_00003178;
- 80% Identity
- -