Alat003338.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:1097475-1099380[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.04 98 1.4 0.0 25 36 48 59 38 66 0.81 2 9 0.24 5.9e+02 -1.1 0.0 27 46 185 204 176 207 0.86 3 9 0.004 9.6 4.6 0.1 20 52 310 342 304 348 0.88 4 9 0.54 1.3e+03 -2.2 0.0 21 40 367 386 365 393 0.70 5 9 2.9e-05 0.069 11.5 0.0 20 52 394 426 381 428 0.90 6 9 0.09 2.2e+02 0.3 0.0 24 52 454 482 450 484 0.84 7 9 0.019 46 2.4 0.0 20 44 506 530 504 536 0.91 8 9 0.016 38 2.7 0.0 21 53 535 567 531 568 0.88 9 9 0.36 8.6e+02 -1.7 0.0 21 45 591 615 587 617 0.84
Sequence Information
- Coding Sequence
- ATGGTATGTATGGTACCAAGTGAATTAGATTTGAACGATTTCAAGTCTGTTGAACTCTTGCTTTACGATTATTGCGAACATAGTGGTTACAATTGCGATTATCTTATTTTGTCACGCAAAAATATGGATGAAAATTTAACAAACACCTGTCGAATTTGTTTACAAGTTATAGTAAAAACCGAGCAGTATTACATTCTCAACAATGACAATGAGTTAAAGGTACAATCCAAGTTATTGGACTTCTTGCCAGAATTTGACTTTAACATCACACTGAACCCTATTATCTGTAATCAATGTGCGATCACAATTGAGGAAATACACGAATTCAAGCAACTGTGCATGCAAACAGAAACGATTATAAGAAAATTGCAACGAATACCTTTGAACGATGTCTTAACGTATGTTAAAGAAGAAAAGATCAAAGAGGAGTTTGTTGATGTTAACATTAAAGTTGAACGTTCAGACTTACAAATTATTAACGATGACTACTTTAAAATTAATACAGATGTCCCTGTATGCATCAAGGAAGCTCCGAAAACAGAAATATATTATTGCCACAATTGCTACTTCAATACTGATGATAAAACAAATTTGATTCAACATCTGAAGATACACAAGAGTATTGGGTCTTTTCAGTGCAACCTATGTAATTATAGCTGCATGAATAAGTTGTCACTTAAAATTCATTTTCGAAAACATACTGGGGAGAGGCCATATAAATGTAATGAATGTGATTACAGATCAGCAAGAAAACGGACACTTCAACTTCATTATTTAATGCACAACACCAAAAATTTATACCAGTGTCAAAGTGTGTATAAGGAGAAAAACATGACGATTCACAGTTCGGTCAAACTATTTATTTGTGCAACTTGTGGATTATTTTGTTGGTGTAAGGAGGATTTAAAAAAGCACATGATCATTCACAGTTCAGAAAAACCATTTGTATGTGAAACTTGTGGGTTTGCTACTCACTATCAAAATAATTTAAAGACACACATGAAAATCCACAGCTCAGAAAAACCATTTATTTGTGAAACTTGTGGGTTATCTTTTGTATGTAAGAGTTATTTAAAGAATCACATGTTTATTCACAGCTCAGAAAAACCATTTATTTGCGAAACTTGTGGGTTATCTTTTGGATGTAAGAAGTATTTAAAAAATCACATGATCATTCACAGCTCCGAAAAGCCATTTGTTTGTAAAACTTGTGGGTTCTCTACTCGAGATCAGCGTAATTTAAAGAAACACATGATAAGTCACAGCTTGGAAAAACCATTTGTTTGTGAAACTTGTGGATACTCTACTGGGCATAAGTGGCTTTTAAAGAAACACATAATGATTCACAGTTTGGTAAAACCGTTTGTGTGTGAAACTTGTGGGTTTGCTACTCAATATCCGAAGAATTTAAAGACGCACATGAAGATTCATAGCTCAGAAAAACCATACAATTGTGAAACTTGTGGGTTATCTTTTGGATGCAAGAATTATTTAAAGAATCACATGATCATTCACAGTTCAGAAAAACCATTTGTTTGTAAAACTTGTGGGTTTTCTGCTCGTCGTAAGGGGGATTTAAAGAAGCATATGATTACTCACTGCTCAGAAAAACTGTTCGTTTGTAAAATTTGTGATTTTTCTGGTCGACGTAAGGGGGATTTAAAGAAGCACATGATCGTTCACAGCTTGGAAAAACCATTTGTTTGTGAAACTTGTGGATACTCTACTGGACACAAGTGGGTTTTAAACAAACACATAATGACTCACAGTTCGGTAAAACCATTTATGTGTGATACTTGTGGATTTGCTACTCGATATCAGAACAGTTTAAAGGCACACATGAAGATTCACAGCTAA
- Protein Sequence
- MVCMVPSELDLNDFKSVELLLYDYCEHSGYNCDYLILSRKNMDENLTNTCRICLQVIVKTEQYYILNNDNELKVQSKLLDFLPEFDFNITLNPIICNQCAITIEEIHEFKQLCMQTETIIRKLQRIPLNDVLTYVKEEKIKEEFVDVNIKVERSDLQIINDDYFKINTDVPVCIKEAPKTEIYYCHNCYFNTDDKTNLIQHLKIHKSIGSFQCNLCNYSCMNKLSLKIHFRKHTGERPYKCNECDYRSARKRTLQLHYLMHNTKNLYQCQSVYKEKNMTIHSSVKLFICATCGLFCWCKEDLKKHMIIHSSEKPFVCETCGFATHYQNNLKTHMKIHSSEKPFICETCGLSFVCKSYLKNHMFIHSSEKPFICETCGLSFGCKKYLKNHMIIHSSEKPFVCKTCGFSTRDQRNLKKHMISHSLEKPFVCETCGYSTGHKWLLKKHIMIHSLVKPFVCETCGFATQYPKNLKTHMKIHSSEKPYNCETCGLSFGCKNYLKNHMIIHSSEKPFVCKTCGFSARRKGDLKKHMITHCSEKLFVCKICDFSGRRKGDLKKHMIVHSLEKPFVCETCGYSTGHKWVLNKHIMTHSSVKPFMCDTCGFATRYQNSLKAHMKIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151842;
- 90% Identity
- iTF_00151842;
- 80% Identity
- iTF_00151842;