Aruf025845.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- Prdm9
- Assembly
- GCA_902196195.1
- Location
- CABIKL010022315.1:1-3779[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0053 1.8e+02 3.2 0.0 22 44 212 234 199 239 0.79 2 5 2.5e-07 0.0088 17.1 0.2 20 48 238 265 231 268 0.87 3 5 0.00078 27 5.9 0.0 21 43 267 289 264 294 0.92 4 5 6.4e-06 0.22 12.6 0.1 21 43 295 317 290 323 0.88 5 5 0.0031 1.1e+02 4.0 0.0 21 43 323 345 320 350 0.89
Sequence Information
- Coding Sequence
- TTGACAAGAGAGATTCTTTATAGCCGATGGATACCTAACACTGCTGACGTGTTACAGATCCGCCGGGATGGCAAGCGGGTGCACTGCGTGGACGCGGAGCACGAGGAAGCCTCCAACTGGATGCGGTACGTGAACTGCGCGCGCCACGAGGGCGAGCAGAACCTGCTGCCCTTCCAGTACAAGGGCTGCCTGTACTACCGCACGGTGAAGGACATCCCCGCCAACACCGAGCTGCTCGTCTGGTACGGCGACTCGTACGCCAGGGACCTGGGCATCGACACCAAGACCTTCAAGGAGCCCCTCAGCGACACGCGTGTCCTCAACGGTAAGTTCCCCTGCAAGGAATGCAGACTGTGCTTCATCAGCCCATTGCTGCTGGATCGACACCTCCAGAGCAGAAAGTGCATCGCTGAGGTGAAGAGGCGCCGCGCCTGTGTCACATCGCGGCCCGCCGAGGGTTGCGgcgaccagcagcgcggccaggaggagcaggacggcagcgcgggcagcagcgcggcggggccggcagccagcagccagcagcgcggccaggaggagcaggacggCAGCGCGGtcggcagcgcgggcagcagcgcggcggggccggcagccagcagccagcagcgcggcaaGAAGAAGCCCTTCAGCTGCAGTACGTGTGGGGCTGCCTTCAAGAAAAATGAGCATCTTGGAAGACACAGGCTCATGCACACGGCTGAGAGGCCCTTCAGCTGCAGCACGTGTGGGGCTGCCTTCAGGCAAAGTGGGACCCTACGGAGGCATGAACTCACCCACACGGGGGAGAGGCCCTTCAGCTGCAGCACGTGTGGGGCTGCCTTCAGGGATAAAGGGACCCTAAGGAAACATGACCGCACCCACACGGGGGAGAGGCCCTTCAGCTGCAGCACGTGTGGGGCTGCCTTCAGGGATAGTAGCACCCTAAGAAGACATGAAGTCACCCACACGGGGGAGAGGCCCTTCAGCTGCAGCACGTGTGGGGCTGCCTTCAGGGATAGATGGCACCTAGGAAGACATCACATCACCCACACGGGGGAGAGGAGGCTGGGTGGCCAGGAGCGGGTCCAGGGGCGGGATCAGGAGCGGGACCAGGGGTGGGCCCAGGGGAGTGTCCAGTGCCAGTCTGGCCACAGCAGCACGCCCActgccgcctggccgcgcgaCAGCCTCGGCCCGCACAGTGGCTGTGCGGTGGCCTCCACCTCGACACGACCGTCCCCTGCCA
- Protein Sequence
- LTREILYSRWIPNTADVLQIRRDGKRVHCVDAEHEEASNWMRYVNCARHEGEQNLLPFQYKGCLYYRTVKDIPANTELLVWYGDSYARDLGIDTKTFKEPLSDTRVLNGKFPCKECRLCFISPLLLDRHLQSRKCIAEVKRRRACVTSRPAEGCGDQQRGQEEQDGSAGSSAAGPAASSQQRGQEEQDGSAVGSAGSSAAGPAASSQQRGKKKPFSCSTCGAAFKKNEHLGRHRLMHTAERPFSCSTCGAAFRQSGTLRRHELTHTGERPFSCSTCGAAFRDKGTLRKHDRTHTGERPFSCSTCGAAFRDSSTLRRHEVTHTGERPFSCSTCGAAFRDRWHLGRHHITHTGERRLGGQERVQGRDQERDQGWAQGSVQCQSGHSSTPTAAWPRDSLGPHSGCAVASTSTRPSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151535;
- 90% Identity
- iTF_00151535;
- 80% Identity
- iTF_00151535;