Aruf013031.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- Hr39
- Assembly
- GCA_902196195.1
- Location
- CABIKL010001886.1:1044-6792[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.094 1.6e+03 -0.9 6.1 97 177 267 357 206 407 0.64 2 3 3.5e-07 0.0062 16.9 0.0 1 21 475 495 475 500 0.92 3 3 4.2e-61 7.3e-57 194.6 0.1 209 406 578 770 570 772 0.97
Sequence Information
- Coding Sequence
- CTGGCTGTACACGCCCacgcggccgcgccgcccccgccgcgcacccTCTCCACGCGTCCAGATGATACGGCGTCCGGCGGTGCTAGCCTGCTTGCGATGAGTGGGGGGGGCCCATGGTGTGGGGCTCGCCCCCCCAAGTCGTCACCGGAGCAGGCCCCCGCAtcccccgcgccctcgcccgccgACCCTCACCCCCCCTCGGCCCCCGGCAAAGTGCCCCTGGACACAGGGCAGTTGGGGGGGCAGGGGCACGGGACGAGGGTAGCTCCCCAAGGGGGGCCTCAGGGGGCTTGCCTCGTAGCGTCAGGACCTGTCACAGTGACGACGataccaggaccaggacccgcCATTGAGACTAATGgtaaAAATGTCAAGTATTATTCTTCGACTTGCAATGGGAGTATTGTGTCGGAACAAAATAAGTGTAGTGTGCTTGTAGGCAGCACTGAAGGAATGATGGAGGACGATGATGATACCACAGGGTCTGATGTTGAAGTCAGCAAAATTCATTATAGTGGTGTAAACATGCGTCTCAAGAAGAAGCATGACTTAATGGCTACTGAGGATTCACAAGATGGATTAGTAAAGGATGAACCAGTAAGGCCTATGTCATGGGAAGGAGAATTGTCCGACACGGAGATGATGCAGGAGGACACATCAATGGAGGGAGTCCAAGTGTCAGTCGTGCACAATACAGAGTCTGCCTCCGATAACAAACCTCTTCCTCTCAAGTTTGGGCAGAATGTGatGGACTATGTGCGGAAACATAATAATAACAGCTCCCAGAGTCCGGGCAGGCCGCAGCCATCCTCCCTGTCATCTGGAGCAACTGAACTTCCCCTTTTAGTTGGCAAGTTACTTGGTGGAGGAAGTTGTTACAGCCCTGTGATGCCCCACAGACCAGTAGGTAGTGTGGGGAAACAAGTCCCTCCCAATCCAAGCCCTGATTCAGCAATTCATTCTGCGTACTCTTATTCATCCCCAACGCAGTCGCCTGTCACTTCAAGGCACAGTTCAAGCCATGGTTTGCCATCGTCGGGATTCTCTTCGCCCTACACTCCCTCGCTCTCCAGGAACAACTCGGATGCCTCTCAATACGGAGGCAGTCAGCACAGCAGCTGTTACAGCCAGAGCTATTCATCAGTATCTGTTTCTCCAACTCAATTCTCTCCAACACACTCTCCAATTCAAGGGAGACATATGCATGCAGTTGGATTCCCATCACCTGTTCTCAATAGAGGCAACAACAATGACTTTAATGATGATCGAGATCGCGATGGTGCTTTATTAGATGAAAAAATGTCTGCCCTAGCTGCAGATCTTGTTCATCATTCTGGTTTGAATGCGCCAGGAATTTCAAGACAGCAACTAATTAACAGtccTTGCCCAATTTGCGGAGATAAAATCTCTGGGTTCCACTATGCTATTCGGGAGGATCGCACGCGGGGTGGCCGCAGCACGTACCAGATCTCTTACACTCTGCCCGCTGGACTGGTTCCTCCGGATGGAAGCAGCACTCCTCCCAGCGGCGGTGCTGgcggccctgggcccgcccctggctgctccaatgggggcagcagcagcaacggcaCCCCTCACTCCAAGTTCCTGGGTCATGGGTCCTCTGGGGAACTTCAAGTTAAGCTGGAGGTTCCAGATGGTGGGTCATCTGTGGCCTCATCTCCTCGCAGAACAATCCCACCGTTATTGGAGGAAATAATGGAGGTCAACAACCTTTCCAACTTAACTGAAATTGCTGATGACCGcctgtacaagatagtcaaaTGGTGCAAAAATTTAcctgtttttaaaaatatatctATTGATGATCAAATTGCTCTGCTACTTAATGCATGGTGTGAGCTCCTGTTGCTGTCGTGCTGTTTCCGTTCGATGAGCACGCCGGGTGAAATTCGAGTGGGACATGGCAAGTCAATCAGCCTCGCTCAAGCTCAAGATCTAGGATTGAGGCCTTGTATTGAGCGCATGTTAAACTTCACAGAACATCTCAGGCGTCTTCGTGTAGACCAATATGAATATGTGGCCATGAAAGTCATTGTGCTTGTAACTTCTGACGTAAGTGATCTATTAGAACCTGAAAAGGTACGAGCCTCTCAAGAGAAAGCATTGCAGGCCTTACAACAGTATACATCTGACTATTACCCTGACATTCCATCCAAGTTTGGTGAACTTCTTCTACGTATCCCAGACCTTCAGCGTACTTGTCAGGTTGGGAAAGAAATCCTTTCAATTATGAATGAAGAGCGGGAAGGACCGAGTTTTCACTTACTTATGGAACTACTTGGAGGTGATCATTAA
- Protein Sequence
- LAVHAHAAAPPPPRTLSTRPDDTASGGASLLAMSGGGPWCGARPPKSSPEQAPASPAPSPADPHPPSAPGKVPLDTGQLGGQGHGTRVAPQGGPQGACLVASGPVTVTTIPGPGPAIETNGKNVKYYSSTCNGSIVSEQNKCSVLVGSTEGMMEDDDDTTGSDVEVSKIHYSGVNMRLKKKHDLMATEDSQDGLVKDEPVRPMSWEGELSDTEMMQEDTSMEGVQVSVVHNTESASDNKPLPLKFGQNVMDYVRKHNNNSSQSPGRPQPSSLSSGATELPLLVGKLLGGGSCYSPVMPHRPVGSVGKQVPPNPSPDSAIHSAYSYSSPTQSPVTSRHSSSHGLPSSGFSSPYTPSLSRNNSDASQYGGSQHSSCYSQSYSSVSVSPTQFSPTHSPIQGRHMHAVGFPSPVLNRGNNNDFNDDRDRDGALLDEKMSALAADLVHHSGLNAPGISRQQLINSPCPICGDKISGFHYAIREDRTRGGRSTYQISYTLPAGLVPPDGSSTPPSGGAGGPGPAPGCSNGGSSSNGTPHSKFLGHGSSGELQVKLEVPDGGSSVASSPRRTIPPLLEEIMEVNNLSNLTEIADDRLYKIVKWCKNLPVFKNISIDDQIALLLNAWCELLLLSCCFRSMSTPGEIRVGHGKSISLAQAQDLGLRPCIERMLNFTEHLRRLRVDQYEYVAMKVIVLVTSDVSDLLEPEKVRASQEKALQALQQYTSDYYPDIPSKFGELLLRIPDLQRTCQVGKEILSIMNEEREGPSFHLLMELLGGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151460;
- 90% Identity
- iTF_00151460;
- 80% Identity
- iTF_00151460;