Aruf028756.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_902196195.1
- Location
- CABIKL010000226.1:1-6793[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-107 1.4e-102 344.0 17.6 1 300 172 486 172 486 0.86 2 2 1 3.5e+04 -6.3 11.2 41 100 523 577 488 604 0.46
Sequence Information
- Coding Sequence
- GAAGGCGGGGAGGAGATCTCCGAGGCGGGCGAGAGAACGCACGGGGAGCGCCCTTCGTCGCCTCAGCCACTGCAGCAGGACAAACCTCGAGACGGCTCATGCGCTGCTGAAAGTGCGTCGGACCTCTTAGAAGAAGACTTGTCGGGTGACACCGAAGTGATGAATGATGGCCAAGTACGACGGCATGAAGAGTCGGGTGACATGAACCAAACCTCGCCAATGCTCTCGCCTCCATCTGACGATGCCGTCGATGGCGATACGAGCTCCGGTGAGCGTCCTTCCGGGGACCACCCGTCTGCCTCCGGGGACCACCTGCCTGCCTCCGGGCACTCCGGCTCCGGTACACGCGACTTGTCgcccgacgaggacgacgacgacgacttcCTGGACGCGGACGaccacgcgccgcccccgctcgtcCGCGCACGCAGCGGCAGCTCTGGCGGCGCGTGGCTcacggacgaggacgaggaggggatCATCTTCGAGTTCCTCGACAAGAGCACCGACGAAGCCgaggcgcgcctcgccgcccgcaGGCAGGCAAGGGCGGAGGCGCGGGAGATTCGAATGAAGGAGCTGGAGCGGCAGCAGAGAGACGCGGACGAGAATGCTGATCGCCTCTACGACATGCACCCAGAAACTGCGCTCCGGACTCCTCCGGTGCGACCCGTTAGTCAGTCTCGAACGCCCGTTGTGAACAACagtgggggcagcgggggcagcggcggcagtggcAACCACCAGTGGAGTCGCAGGTCTTCCGAGGACTCCCTGGAGGATGGCGCCGCACCTGGCTCGGGCGAGAAAGACGGAAGATCACTGCGAGAAATGAGGCACGACTTGAAGGAATTAGAAGACAAGTTCCGGAAGGCTATGATCCAGAATGCACAGCTGGACAACGAGAAGGCCAGCTATACCTATCAGGTGGAGCTTCTGAAAGACAAAGTGGAAGATCTTGAGGTGGCCTACGCACAACTACAGCGAGAAAATAGGGAAAAATGCCGCGAGGCAGACCAGCTCAAACGTGTTGCCCAGTGCCTGAAAGATGACTTGGCAATGTGCCGAGCAGCTTTAGAGGAGCGAGATAGGCTTATTCAGGAGAAAGGTCTAGTGATTGTAGGGGATGAAGGTGAGCTAGATGGCTGTGAAGATGGGGAGAAGCGAACACCTAGGAAAGCTCTTGTCTCTGTTGAATCTGCTGAAATGCTGCAGAATGCAGGTGAAGGTTCACTAGATGTGCGACTGCGAAAGTTAGCGGAAGAAAGGAATGAACTTCTTGATCAGATTCGGCATTTCAAATTGGAGCTAGAAGAAGAACGCAGTAGACATCGGAATGGGCCTCGCACTCTGAATGGTCCACCAGATTCTGATATGGAGGACCTCCAAAGAGAAGCTCAAAAATTGCTAGGGGATTATAAATTTAAACTCCAGAAAGCAGAGCAGGATGTTTCAACATTGCAGGCCAATGTTGCAAGATTGGAAAGTCAAGTTATTCGGTATAAATCAGCAGCAGAGACTGCAGAAAAGGTAGAGGATGAGTTGAaggttgaaaaaagaaaacttcaaCGAGAGGAAGATTATGATCAATCTGAAAAGAATTATGGCATGGGAAAGAAGGATATGAATCACGAGTCCAGCAGAAGtgaggaagaagatgatgatgatgatgaagacaaTAGTGAGGAATCTGCCCGCAATGAAAGTATGGAACAGGaggaaacaaataaaacaactgAAATAAGTAGTGAAGCAAGTGAGGAGGAATATTATGAGGGGAATGAGCTCAGTCACATTACAGAAAATGAAGCAAATGAGGCGCCGGAAACAGATGAAGAATGTCACACCGGGAATGAAAACCATTATGCTTTTGATGATGAAAAATCTGATAATGTCTCTGATGTATGTGAAGCAAAGTGTGACGTTTctaaagatgatgatgaagatttCTGGGCTGTTCTGAGTGATAGCTAA
- Protein Sequence
- EGGEEISEAGERTHGERPSSPQPLQQDKPRDGSCAAESASDLLEEDLSGDTEVMNDGQVRRHEESGDMNQTSPMLSPPSDDAVDGDTSSGERPSGDHPSASGDHLPASGHSGSGTRDLSPDEDDDDDFLDADDHAPPPLVRARSGSSGGAWLTDEDEEGIIFEFLDKSTDEAEARLAARRQARAEAREIRMKELERQQRDADENADRLYDMHPETALRTPPVRPVSQSRTPVVNNSGGSGGSGGSGNHQWSRRSSEDSLEDGAAPGSGEKDGRSLREMRHDLKELEDKFRKAMIQNAQLDNEKASYTYQVELLKDKVEDLEVAYAQLQRENREKCREADQLKRVAQCLKDDLAMCRAALEERDRLIQEKGLVIVGDEGELDGCEDGEKRTPRKALVSVESAEMLQNAGEGSLDVRLRKLAEERNELLDQIRHFKLELEEERSRHRNGPRTLNGPPDSDMEDLQREAQKLLGDYKFKLQKAEQDVSTLQANVARLESQVIRYKSAAETAEKVEDELKVEKRKLQREEDYDQSEKNYGMGKKDMNHESSRSEEEDDDDDEDNSEESARNESMEQEETNKTTEISSEASEEEYYEGNELSHITENEANEAPETDEECHTGNENHYAFDDEKSDNVSDVCEAKCDVSKDDDEDFWAVLSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -