Atur048587.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:15407225-15418060[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.25 3e+03 0.1 0.2 16 31 102 119 89 132 0.63 2 7 0.041 4.9e+02 2.6 0.1 21 45 137 161 129 164 0.87 3 7 0.005 59 5.6 0.2 21 44 165 188 161 192 0.87 4 7 0.0002 2.4 10.0 0.0 21 43 193 215 189 223 0.90 5 7 0.7 8.3e+03 -1.3 0.0 26 43 226 243 220 247 0.75 6 7 1.1e-05 0.13 14.0 0.1 23 48 279 304 273 308 0.86 7 7 0.041 4.9e+02 2.6 0.1 21 44 305 328 301 332 0.85
Sequence Information
- Coding Sequence
- ATGGCACATTCATCATTCCATACCAGTAAACAAGAGCACTTCAGCATGTCTAATTCTACTAGCATTTTACTTCCCGAGATATCCGTTAAGATAGAACCGGAGCTGGCGGTGGAAGTGGAAGTGAAGTTGGAGCCGGTCGGTGACTGGGAAGAGTGGCCGAGCCAGGTTGAGAGTGAGACGGGCTGCGAGGACGAAGTGAAGGATGACCCGACACCAAGCCCTGAGCTGCTGCCACGACCCAACCGGACTTCCATTCACCAAGCCGCTGTGACCACGGCCCCCGGAACGACGCACGACGACGAGCAGAGCGACACTCAACACGCGAAACCGAAACCCTTCTCCTGCGACATATGTCACAAACAGTTCGCGAGATTAAGTCACGTGCAagtgcacacacgcacacacaccgGCGAGAAACCTTACGCCTGTGAAACGTGTCACAAGAGATTCTCGGATTcatcacatttaaaaaatcacaTTCGGATTCATTCAGACGAAAAACCTTATACGTGCGAAGTCTGTACAAAAACATTTAAACTACCATCACATTTGAAGCGACATCATCGAATTCACACGGGGGAGAAGCCGTACGCTTGTGATATATGCGAAAAAACGTTCTCACAATCGGATAACTTGAAGACGCATAAGCTAATCCACACGGGTCTTAAATCGTACACTTGTGAGATATGTGAAAAGAGCTTTACACTGTCTTCCCATTTAAAGGTACACAGTCTTATCCACGCGGACGAAAAGTCATATTCGTGCTCAGTGTGTGAAAAGAAGTTTACGCATCGCTGGGATTTGAACTTGCATGAACGAGTCCACACAGGAGTCAAACCGTATACTTGCGGCATTTGTTACAATACATTCAGGCAGCTCAGCCATCTAAAGGTGCACATCAGAATCCACACGGGTGAAAAGCCTTATTCTTGCAAAATTTGCAAGAAGAAATTCGTGGAATCGTCCCATTTGAAAAGCCATACTCGTATACACACCGGAGTACAGACGTACCCCATTGCTCATTCTTCCCCGTCTCTGCCCCCACCCGCCCCTCTGTCCCCGCCCACCCCGCTGGCCCCGCCCGCCCTTCTGACCCCTGCCGCCCTGCTGCCCCCGCCCGCCCCTCTGCCCCCTGCCGCCCTTCTGCCCCCGCCCGCCCCGCTGCCTGGGCCGCCCGCGGCCTCGGTCCtcttaaataatatgaatataaagtag
- Protein Sequence
- MAHSSFHTSKQEHFSMSNSTSILLPEISVKIEPELAVEVEVKLEPVGDWEEWPSQVESETGCEDEVKDDPTPSPELLPRPNRTSIHQAAVTTAPGTTHDDEQSDTQHAKPKPFSCDICHKQFARLSHVQVHTRTHTGEKPYACETCHKRFSDSSHLKNHIRIHSDEKPYTCEVCTKTFKLPSHLKRHHRIHTGEKPYACDICEKTFSQSDNLKTHKLIHTGLKSYTCEICEKSFTLSSHLKVHSLIHADEKSYSCSVCEKKFTHRWDLNLHERVHTGVKPYTCGICYNTFRQLSHLKVHIRIHTGEKPYSCKICKKKFVESSHLKSHTRIHTGVQTYPIAHSSPSLPPPAPLSPPTPLAPPALLTPAALLPPPAPLPPAALLPPPAPLPGPPAASVLLNNMNIK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149689;
- 90% Identity
- iTF_00149689;
- 80% Identity
- iTF_00149689;