Atur052364.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- MZF1
- Assembly
- GCA_905147355.1
- Location
- LR990307.1:126796-134842[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.25 3e+03 0.1 0.0 21 44 120 143 110 147 0.82 2 8 0.0014 16 7.4 0.2 21 52 148 179 142 181 0.87 3 8 0.33 3.8e+03 -0.3 0.1 21 43 176 198 172 204 0.80 4 8 0.0028 33 6.3 0.3 21 51 204 233 201 235 0.93 5 8 0.0084 99 4.8 0.0 20 45 277 302 261 305 0.84 6 8 0.00011 1.3 10.9 0.0 21 47 306 332 299 336 0.91 7 8 0.27 3.1e+03 0.0 0.0 20 43 360 383 350 388 0.78 8 8 0.0039 46 5.9 0.2 21 46 389 414 382 419 0.87
Sequence Information
- Coding Sequence
- ATGTCACAGGGTTCACGCGTCGTACGCCTCGCAGAACCCGTGTCCATTCAAATAGAAATAGAGGCTATTAAACAAGAACCAGACTGCACAAGTGAGCAGACAGACTTCTCGAGCCAAGAGACGGTGTTTATCAAGAAGGAGCCGACATGGACACAGGAGGACGCGGCGCCTTTAGAAGTGGAAGTGTCGGTGAAGGAGGAACCGCAGGATGGGGGGGCGGAGTGGGGACACAGCGAGCCGCCCGACTGGCCCCCCGACCAAAGCTCTCAAATACATTCTGACGACCATTCGCTCTCGGCGTCCGCGGCGGACGCGGGCCACGCGCACGACAAGCAGTGTGGAGCCGACACCGACCAAACCAAAACAAACATCTTCTGTGACGTTTGCGGCAAAACATTCAGCAAAAAGCACAACCTGATCCGACACAAGCGAGTCCACACAGGCGAAAAACCGTACGCTTGTGAAATATGCAATAAAGCCTTCCCGGCATCACACAGCTTGAAGAAACACATTCGAATACACACTGGAGAAAAGCCTTATAATTGCAACGTGTGTAAAAAGGATTTTAGAACTTTATCTATACTCAAGCAACATCAACTAGTTCACACTGGAGAGAGACCTTATGCTTGCGATATGTGTCATAAAAGCTTTAGGAAAGCCACCGTTTTGACGATACACAAAGAACGGCATATCGCAAAGGCCTTAAAGCAATCGAAACTGAAAATTAAACCGCCAAAACCACCTAAGCCAATTAAGATTTTTTGTTGTGAAGTATGTAAGAAGACATTTAATAAGTTATCCGGTTTGAAAAAACATAAGTTAATTCACACGGGAGAGAAACCTTATTCATGCACTTTGTGTGAGAAGACTTTTAGGGAATCAGCGCGGCTGGCGGACCACGTGCGCGTGCACACCGGCGACCAGCCGTTCGCGTGCGATGTCTGCGAGAAGAAGTTCACGCAGAAGACTAATCTAAACAGGCATGTGCGGCTTCACGAGAAATCATCAAAAATGGACGGTTCCGCGGCGGACGCGGCCCGCGTGCACGACAAACAACACTCTGGAGACGAAACCGACCAAACCAAAACGAAAGTGTTCTGTGACGTTTGCGGCAAAACATTCAGCAAAAAGAACAACCTGATCCGACACCAGCGAGCCCACACAGGGGAGAAGCCGTACGCCTGCCACATATGCAACAAGGCCTTCCCGACGTCGGATAGCTTGAAGAAACACATTCGAATACACACCAGAAGAAAAACCTTATAA
- Protein Sequence
- MSQGSRVVRLAEPVSIQIEIEAIKQEPDCTSEQTDFSSQETVFIKKEPTWTQEDAAPLEVEVSVKEEPQDGGAEWGHSEPPDWPPDQSSQIHSDDHSLSASAADAGHAHDKQCGADTDQTKTNIFCDVCGKTFSKKHNLIRHKRVHTGEKPYACEICNKAFPASHSLKKHIRIHTGEKPYNCNVCKKDFRTLSILKQHQLVHTGERPYACDMCHKSFRKATVLTIHKERHIAKALKQSKLKIKPPKPPKPIKIFCCEVCKKTFNKLSGLKKHKLIHTGEKPYSCTLCEKTFRESARLADHVRVHTGDQPFACDVCEKKFTQKTNLNRHVRLHEKSSKMDGSAADAARVHDKQHSGDETDQTKTKVFCDVCGKTFSKKNNLIRHQRAHTGEKPYACHICNKAFPTSDSLKKHIRIHTRRKTL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149675; iTF_00148691;
- 90% Identity
- iTF_00149675; iTF_00148691;
- 80% Identity
- iTF_00149675;