Atur049871.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:1285151-1317727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.055 6.2 9.1 3.0 1 23 275 298 275 298 0.98 2 15 0.00081 0.092 14.9 0.8 2 23 306 327 306 327 0.96 3 15 2.4 2.7e+02 4.0 0.9 1 20 331 350 331 353 0.85 4 15 0.00012 0.014 17.4 2.4 1 23 358 381 358 381 0.96 5 15 0.00076 0.086 15.0 0.1 2 23 390 412 390 412 0.94 6 15 0.045 5.1 9.4 0.1 3 23 451 472 450 472 0.92 7 15 0.00021 0.024 16.7 0.7 1 23 477 500 477 500 0.95 8 15 9.4e-05 0.011 17.8 0.1 3 23 530 550 529 550 0.98 9 15 0.00014 0.015 17.3 0.2 1 23 556 578 556 578 0.96 10 15 0.33 37 6.7 0.4 2 20 585 603 584 605 0.88 11 15 0.99 1.1e+02 5.2 0.6 2 20 693 711 693 713 0.87 12 15 0.99 1.1e+02 5.2 0.6 2 20 747 765 747 767 0.87 13 15 0.99 1.1e+02 5.2 0.6 2 20 801 819 801 821 0.87 14 15 0.99 1.1e+02 5.2 0.6 2 20 855 873 855 875 0.87 15 15 7.8e-06 0.00089 21.2 0.4 1 23 951 974 951 974 0.96
Sequence Information
- Coding Sequence
- ATGGCCACAGTTAAGTCAGAAGAGGCGGAAGAGCTGCGCGCTTGTAGAATTTGCCTCACCACCGATGAGAAACTCTTTGGTATTCATGAACAGCGGTTGGAAGAAGCTTATACCGATATTATTGGTGCGACgCTATCGGTATGGGACGGGTGTCCGCAGCACATCTGTGGCTCCTGCGGCATACAGCTCCTGAAAGCGGCAGCTCTCCGAGCTCGGGGCCAGCGCGCAGACACGCTGCTCAGGCAGGCACTCGTGCAGCAGCACTTTATAACGAACAGCTACCTCGCCACCATCGACCGTGTATCCCACCAACTATCCATCTGTTTCACCATCCACCATCCCACCACCATCTCCACCACCCACGAGGAAACTAAACAGGAACTAGAAGATGATGACTTTGATATGTACCCGGAGTTCGATGTTCCGATAATCAATTTGAAGAATAGTATAGAGAAGGATTTGGAGGTACCTTCTCCGGAGCTTTTGGAGGTGTTGAAGGCTGATGAGGAGCTGGAGGTGAAGGAGGAGCCGGTTAAGAAGAGGAAAGAGAGGAAGAAAGGGGGAGAAAAGGTTAAATTGAAAAAAGATAAAAGTGTGAAAACGAAGAAAAAAGAAGTACAGAAGTCAGAAGAGAAGGCAGAAAAGAAGGAACCGAAGAAATACAAGCGGGAGCTGAAGGGGTTTAGGAAATTCTTCGCAAGCGAAGAAGATTACCTGAAGTTTGAGAACACTTACAATATAGAGATAGTGAAACTAACAGAAGAAGAGCAACTAAGAGAAATGGACGCGAGGAAAGAGTCCAGCAACTACCTGCGCTCCGCGTACCGCTGCGAGCAGTGCTTTAAGGGCTTCCTCTCGGAGACCACGTACCAGAACCACCAGAGGAAGACACACGACATTAGTAACGGACGCAACGAGTGCTCGCTGTGCGGCGCGCGCTTCCGCCATCCCGCGGGGCTAAGGAAACACTTCGAGTCGCACACCTTGAAGTTCATCTGCAAAATCTGCCAGTTCATGACCCGCCACCGGAGCATGGCGGTGATGCACGCGGACTTCCACTCGGGGAAGACCTTCGCCTGCAAATACTGCGGCCTCACCTTCAACAAGCAGACGACGTTCAACACGCACACACGCGTGCAGCATCCGCTAGAAAACGCCTCGGCCGGTACTTGCGACGTGTGCGGGGAGACCTTCACCGGCAAGCGCGGCCTGCAGCAACACAAGGCCATCGCGCACAAGAAGCTGACTACGCCCGAGCTGAAGTGTCGCGGCTGTCTGGTGCAGTTCGAGAACCTGGACGCGAAGACACGGCACAGGGTCAACAACATCTGTGACCCCAAACTGAGGCCGTGTCCGGCGTGCGGCGAGCGTTTCTCGGACGAGGAGGGCGCGAAAAAGCACTACCAGGACAACCACGTCAAGGAACACTACAAATGTGACCAGTGCGACACAACTTTCGGGAAGAAGTCTTCCCTGGCGGTACACTTCGAGCGCGTGCATCTCAAGATCAAACCGAAGAAGCCTGCCTTCTACAAGTACCACCAATATGGCAAAGGTGGCAGGATGAAGATGCGAAACTCGGAGATTTGTGAGATCTGTGGGAAGGGATATCCGGATACAACATGGCTGCGGTACCACCAGCGCACGCACACCGGCGAGCGGCCCTACAAGTGTGAGCAGTGCACTAAGAGCTACATGACACCGGCTGGACTACAGCGGCACGTGGTGATCCACACGGGCGTGCGGCGCTGGCAgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctgcttcgtgctcgctgtgccccaagaccctgcaccagtcctccatctacacgctcaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccctgcaccagtcctccatctacacgcacaagctgcttcgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccctccaccagtcctccatctacacgcacaagctgcttcgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccctccaccagtcctccatctacacgcacaagctgcttcgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccctgcaccagtcctccatctacacgcacaagctgcttcgtgctcgctgtgccccaagaccttcctgcaccagtcctccatctacacgcacaagctggtgagtgtctccaactacatcatcactccaccagacttcagcttcgtgctcgctgtgccccaagaccctgcaccagtcctccatctacacgcacaagctgTCCGCTTGCAGCTGTCGTGCAGTCCTGTCAACCGCACACCAACTGCAAGCTGGCTGCACGGTGGTAATGCAGTCGTATTGCAGTTGGAGCAACTATTGCAGTCGAACGTCCACACAGGCGAGAAGCCCTACGTGTGTCAGATCTGCAGCAAAGCCTTCACCCAGTCAGGGTCTCTCCAGACGCACGTCAAGTACGTGCACATGAAGCTGaagccgccgccgcgccgccgccggcagGACCTCAAGCCGCTCCTCTGA
- Protein Sequence
- MATVKSEEAEELRACRICLTTDEKLFGIHEQRLEEAYTDIIGATLSVWDGCPQHICGSCGIQLLKAAALRARGQRADTLLRQALVQQHFITNSYLATIDRVSHQLSICFTIHHPTTISTTHEETKQELEDDDFDMYPEFDVPIINLKNSIEKDLEVPSPELLEVLKADEELEVKEEPVKKRKERKKGGEKVKLKKDKSVKTKKKEVQKSEEKAEKKEPKKYKRELKGFRKFFASEEDYLKFENTYNIEIVKLTEEEQLREMDARKESSNYLRSAYRCEQCFKGFLSETTYQNHQRKTHDISNGRNECSLCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFACKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRGCLVQFENLDAKTRHRVNNICDPKLRPCPACGERFSDEEGAKKHYQDNHVKEHYKCDQCDTTFGKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGGRMKMRNSEICEICGKGYPDTTWLRYHQRTHTGERPYKCEQCTKSYMTPAGLQRHVVIHTGVRRWQCSLCPKTFLHQSSIYTHKLVSVSNYIITPPDFSFVLAVPQDLPAPVLHLHAQAASCSLCPKTLHQSSIYTLKLVSVSNYIITPPDFSFVLAVPQDPAPVLHLHAQAASCSLCPKTFLHQSSIYTHKLVSVSNYIITPPDFSFVLAVPQDPPPVLHLHAQAASCSLCPKTFLHQSSIYTHKLVSVSNYIITPPDFSFVLAVPQDPPPVLHLHAQAASCSLCPKTFLHQSSIYTHKLVSVSNYIITPPDFSFVLAVPQDPAPVLHLHAQAASCSLCPKTFLHQSSIYTHKLVSVSNYIITPPDFSFVLAVPQDPAPVLHLHAQAVRLQLSCSPVNRTPTASWLHGGNAVVLQLEQLLQSNVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQDLKPLL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148715;
- 90% Identity
- -
- 80% Identity
- -