Acap033347.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392523.1:1691343-1714220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.04 3.7 9.2 3.0 1 23 275 298 275 298 0.98 2 11 0.0006 0.055 14.9 0.8 2 23 306 327 306 327 0.96 3 11 1.8 1.6e+02 4.0 0.9 1 20 331 350 331 353 0.85 4 11 4.8e-05 0.0044 18.4 2.6 1 23 358 381 358 381 0.97 5 11 0.00056 0.052 15.0 0.1 2 23 390 412 390 412 0.94 6 11 0.015 1.4 10.5 0.2 3 23 451 471 450 472 0.93 7 11 0.00016 0.014 16.8 0.7 1 23 477 500 477 500 0.95 8 11 6.9e-05 0.0063 17.9 0.1 3 23 530 550 529 550 0.98 9 11 0.0001 0.0092 17.4 0.2 1 23 556 578 556 578 0.96 10 11 0.24 22 6.7 0.4 2 20 585 603 584 605 0.88 11 11 5.8e-06 0.00053 21.3 0.4 1 23 906 929 906 929 0.96
Sequence Information
- Coding Sequence
- ATGGCCACAGTTAAGTCAGAAGAGGCGGAAGAGCTGCGCGCTTGTAGAATTTGCCTCACCACCGAGGAGAAACTCTTTGGTATTCATGAACAGCGGTTGGAAGAAGCTTTTACCGATATTATTGGCACGACGCTATCGGTATGGGACGGGTGTCCGCAGCACATCTGCGGCTCCTGCGGCATGCAGCTCCTGAAAGCGGCAGCTCTCCGAGCTCGGGGCCGGCGCGCAGACACGCTGCTCAGGCAGGCACTCGCACAGCAGCAGTTTATAACGAACAGCTACCTCGCCACCATCGACCGTGTGTCCCACCAACTATCCATCTGCTTCACCATCCACCATCCCACCACCATCTCGACCACCCACGAGGAAACCAAACAGGAACTAGAAGATGATGACTTTGATATGTACCCGGAGTTTGATGTCCCGATCATCAATTTGAAGAATAATATAGAGAAGGATTTGGAGGTACCTTCTCCGGAGCTTTTGGAGGTGTTGAAGGCTGATGAAGAGCTGGAGGTGAAGGAGGAGCCGGTTAAGAAGAGGAAAGAGAGGAAGAAAGGAGGAGAGAAGGTTAAATTGAAGAAAGATAAAAGTGTGAAAACGAAGAAAAAAGAAGTAGAGAAGTCAGAAGAGAAGGTAGAAAAGAAGGAACCGAAGAAGTACAAGCGGGAGCTGAAGGGGTTTAGGAAGTTCTTCGCAAGCGAAGAGGATTACGTGAAGTTTGAGAACACTTACAATATAGAGATAGTGAAACTAACAGAAGAAGAGCAACTAAGAGAAATGGACGCGAGGAAAGAGTCCAGCAACTACCTGCGCTCCGCGTACCGCTGCGAGCAGTGCTTCAAGGGCTTCCTCTCGGAGACCACGTACCAGAACCACCAGAGGAAGACACACGACATTAGCAACGGTCGCAACGAGTGTTCTTTGTGCGGCGCGCGCTTCCGCCACCCCGCGGGGCTGAGGAAACACTTCGAGTCGCACACGCTGAAGTTCATCTGCAAAATCTGCCAGTTCATGACCCGCCACCGGAGCATGGCGGTGATGCACGCGGACTTCCACTCGGGGAAGACCTTTGTCTGCAAATACTGCGGCCTCACCTTCAACAAGCAGACAACGTTCAACACGCACACGCGCGTCCAGCATCCGCTAGAAAACGCGTCGGCCGGCACCTGCGACGTGTGCGGGGAGACCTTCACCGGCAAGCGCGGCCTGCAGCAACACAAGGCCATCGCTCACAAGAAGCTGACGACGCCCGAGCTGAAGTGCCGCGGCTGCCTGGTGCAGTTCGAGAACCTCGACGCGAAAACACGGCACAGGGTCAACAACATCTGTGACCCCAAACTGAGGCCGTGCCCGGCGTGCGGCGAGCGGTTCTCGGACGAGGAGGGCGCGAAGAAACACTACCAGGACCACCACGTCAAGGAACACTACAAATGTGACCAGTGCGACACAACTTTCGGCAAGAAGTCTTCCCTGGCGGTCCACTTCGAGCGCGTGCATCTCAAGATCAAACCGAAGAAGCCTGCCTTCTACAAGTACCACCAATATGGCAAAGGTGGCAGGATGAAGATGCGAAACTCGGAGATTTGTGAGATCTGTGGGAAGGGATATCCGGATACAACATGGCTGCGGTACCACCAGCGCACGCACACCGGCGAGCGGCCGTACAAGTGCGAGCAGTGCACTAAGAGCTACATGACCCCGGCTGGACTACAGCGGCACGTGGTGATCCACACGGGCGTGCGGCGCTGGCAGTGCTCGCTGTGCCCCAAGACGTTCCTACACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTCCAGCTTCGTGCTCGCTGTGCCCCAAGACCAGGAGCACCAGTCCTCCATCTACACGCACAAGCTGGTGAGTGTCTCCAACTACACCATCACTCCACCAGACTTCAGCCTCGCTTCTGACCGCTTCCCGCCAGTCCACACTGGCGAGAAGCCCTACGTGTGCCAGATCTGCAGCAAGGCGTTCACGCAGTCGGGGTCTCTCCAGACGCACGTCAAGTATGTGCACATGAAGCTGAAGCCGCCGCCGCGCCGCCGCCGGCAGGACCTCAAGCCGCTCCTCTGA
- Protein Sequence
- MATVKSEEAEELRACRICLTTEEKLFGIHEQRLEEAFTDIIGTTLSVWDGCPQHICGSCGMQLLKAAALRARGRRADTLLRQALAQQQFITNSYLATIDRVSHQLSICFTIHHPTTISTTHEETKQELEDDDFDMYPEFDVPIINLKNNIEKDLEVPSPELLEVLKADEELEVKEEPVKKRKERKKGGEKVKLKKDKSVKTKKKEVEKSEEKVEKKEPKKYKRELKGFRKFFASEEDYVKFENTYNIEIVKLTEEEQLREMDARKESSNYLRSAYRCEQCFKGFLSETTYQNHQRKTHDISNGRNECSLCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFVCKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRGCLVQFENLDAKTRHRVNNICDPKLRPCPACGERFSDEEGAKKHYQDHHVKEHYKCDQCDTTFGKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGGRMKMRNSEICEICGKGYPDTTWLRYHQRTHTGERPYKCEQCTKSYMTPAGLQRHVVIHTGVRRWQCSLCPKTFLHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDSSFVLAVPQDQEHQSSIYTHKLVSVSNYTITPPDFSLASDRFPPVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQDLKPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149752;
- 90% Identity
- -
- 80% Identity
- -