Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990288.1:19355359-19364468[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.011 1.3 11.3 0.6 3 23 205 226 204 226 0.96

2 23 0.36 41 6.5 0.2 1 21 610 630 610 631 0.96

3 23 8.2 9.3e+02 2.3 0.3 1 22 672 693 672 695 0.82

4 23 0.0014 0.16 14.1 0.7 3 21 706 724 704 725 0.95

5 23 0.38 43 6.5 0.2 3 23 734 755 732 755 0.91

6 23 0.0014 0.16 14.1 0.3 3 23 775 796 773 796 0.96

7 23 0.002 0.23 13.6 0.7 1 23 802 825 802 825 0.95

8 23 0.15 17 7.7 0.0 1 23 851 874 851 874 0.90

9 23 0.023 2.6 10.3 3.4 1 23 879 901 879 901 0.97

10 23 0.023 2.6 10.3 0.3 1 23 907 930 907 930 0.95

11 23 0.0028 0.32 13.2 1.3 1 23 943 965 943 965 0.97

12 23 0.0018 0.2 13.8 4.0 1 23 1014 1037 1014 1037 0.96

13 23 0.0083 0.94 11.7 1.8 1 23 1113 1136 1113 1136 0.96

14 23 0.0013 0.15 14.2 2.1 2 23 1162 1184 1161 1184 0.95

15 23 0.11 12 8.2 0.1 2 23 1190 1212 1189 1212 0.93

16 23 0.012 1.4 11.2 0.2 1 21 1256 1276 1256 1277 0.95

17 23 0.0015 0.17 14.0 0.6 1 23 1287 1309 1287 1309 0.93

18 23 0.00011 0.012 17.6 0.3 2 23 1401 1423 1401 1423 0.93

19 23 4.1e-07 4.6e-05 25.3 1.4 3 23 1430 1450 1429 1450 0.98

20 23 0.012 1.3 11.2 0.7 3 23 1472 1492 1470 1493 0.95

21 23 0.23 25 7.2 0.0 1 23 1514 1536 1514 1536 0.97

22 23 0.034 3.8 9.8 0.6 1 23 1542 1565 1542 1565 0.95

23 23 0.00038 0.043 15.9 0.7 1 23 1573 1596 1573 1596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.011	1.3	11.3	0.6	3	23	205	226	204	226	0.96
2	23	0.36	41	6.5	0.2	1	21	610	630	610	631	0.96
3	23	8.2	9.3e+02	2.3	0.3	1	22	672	693	672	695	0.82
4	23	0.0014	0.16	14.1	0.7	3	21	706	724	704	725	0.95
5	23	0.38	43	6.5	0.2	3	23	734	755	732	755	0.91
6	23	0.0014	0.16	14.1	0.3	3	23	775	796	773	796	0.96
7	23	0.002	0.23	13.6	0.7	1	23	802	825	802	825	0.95
8	23	0.15	17	7.7	0.0	1	23	851	874	851	874	0.90
9	23	0.023	2.6	10.3	3.4	1	23	879	901	879	901	0.97
10	23	0.023	2.6	10.3	0.3	1	23	907	930	907	930	0.95
11	23	0.0028	0.32	13.2	1.3	1	23	943	965	943	965	0.97
12	23	0.0018	0.2	13.8	4.0	1	23	1014	1037	1014	1037	0.96
13	23	0.0083	0.94	11.7	1.8	1	23	1113	1136	1113	1136	0.96
14	23	0.0013	0.15	14.2	2.1	2	23	1162	1184	1161	1184	0.95
15	23	0.11	12	8.2	0.1	2	23	1190	1212	1189	1212	0.93
16	23	0.012	1.4	11.2	0.2	1	21	1256	1276	1256	1277	0.95
17	23	0.0015	0.17	14.0	0.6	1	23	1287	1309	1287	1309	0.93
18	23	0.00011	0.012	17.6	0.3	2	23	1401	1423	1401	1423	0.93
19	23	4.1e-07	4.6e-05	25.3	1.4	3	23	1430	1450	1429	1450	0.98
20	23	0.012	1.3	11.2	0.7	3	23	1472	1492	1470	1493	0.95
21	23	0.23	25	7.2	0.0	1	23	1514	1536	1514	1536	0.97
22	23	0.034	3.8	9.8	0.6	1	23	1542	1565	1542	1565	0.95
23	23	0.00038	0.043	15.9	0.7	1	23	1573	1596	1573	1596	0.96

Sequence Information

Coding Sequence: aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGGTGACTCGGAGCCTCACGTCCTCGCATCGAAAATCAGGGATTGCGTGGCTGTTCAAATAAACGAGAATGACGACCTGCCAACGAATGCCTGCAGGAAATGCGTGGACAACGTCAATAACTGGCATATATTTAAAACAGTATGTGAAAGGACTCAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAACATAAAAAGTGAACCATTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGGAGTTATAATGAGGTCGCCGGGAGCAGCAAAGTGCAACCCGAGGGCCCACCGATCCTGGCTTCATTGGGACTCACACCGCGGAGTGATAAGGGAGTCGAGAGCGAAAAAGATGAAGAAGACGAGGAAGATGAAGAAATGATGGAGCCTGCTCAGCAGTATACCAAAGTGCCCAACATGCCCGAAGTGTCCATCACTGTGATGCGTCCTACCGGTGAGACCTTGCACGCTCGTCAAGGCATCCAGCAGTTGGCTTCAAAGGATTGTCTCGTCTGCGGCCGTGCCTACAGGTACTCTCACAACGCCCGACGACACGAGCTGACCGCTCACAGCTTTGACCGATACACTAATAAAATCAATACTATCAAAAAACCAAAATCACACATGCAACCTAAACTCAGACTCAACCCGTTCAACCCGAAAGCACGACTTATGCCTAACCCTATCAATCACAAGCAATTCCAAAAACCGATGCCATCTAGGATCATGCCGTCGAGGGTCGTGGCGCCGCCGAAGCCTATACCGATCAAAAACGCCAAACCAGTTCAAAATAATTTACCTTACCCCTTGCGCATTAAAGCACTGAAagatttacaaattaaaaagaaagaacCACAGATATTAAAGACTCTGCTCACTTCTAAACCTGAGCTGCTGGTCTCTGAGCCAGAAATTATAAATTCGGGACCAGAAAGCCCAGAGACTCTAATCTCGGAACCAGAGATAGCATCATTCCAAGTTGAAACTATTTTGTCTGAACCCTACGACCAAAACCAGGAAGAAGAAGAGGAAGCTGATGAATCCCAGAATCAAAACCAGCATTATGATACTGTGGACATGGAATCTGACAATGAAATTGAAATCGCTCGTCAACAAGAAAATGATGGCGACATGGACGACAACCAAGAGGAACATGATGGTGAAGACAACTTACAACAGGACAATGAACATATGGAAACAATGGAAGGTGAAATGAGTGATAACGAGAATGGACAACAAGAAGAAGATGATGAACATGGTGACAGTCAGGGCGATATTACAATAGACGAGCATAATGATATTCAAGGTGAAGATGCCGAAAGGGATAACGGTGAGGATAATGGAGAAAGAGAGGATGACCAAGAAGATGGTAACGATGCTGAAGACAATGAAAACGAAGAAGAAGATCTTCCACCAGGGTTAGCACCAGTTGTTGAAATCAATGAAGATATGCAAACTAATTCGTACAATAGTGAACAGAATGAAGACGAAGAACAGGAACTTGATGAATCTGCAGCTAACGAGACCCTGGAGGAAGCAGATAAGGAAATCGACCCCGACAAGATATACGTCACTAAAACTCAGAGAGACTTTATTAACAAGTACAGAGACATTATTCAACAGATCAACACTAAGCGATGCCTGTGCTGCGACAGGGAACATCCTCGTAGGAAGGCTGTTATTCAACATCTGCAgaaaaatggcaaaaaagtACCGAAGCATACCTGTTACAATTGCGTTATTACTTTTGGTCATATTGGCGCATTGCTCAGCCACATGCGAGCTAATGTTTGCACAGACTTGTGGAAGGTCATCTACAATGAGGAAGGAATTACTGACGACCTGGTCATTTCAGATCGTAAGGACAATAAGGTCCAATACAAGGATATCTTCAATGCTAGATCGTATGCATGTAAACTGTGCCCGGCCAAATTCCAACTTAAACAGTTTATTATGAAACACGTTCTGGACGTTCACGAGGACGGTCAATCCAGAGTGCCAATGGCCTGTGTACACTGCGGATCCAGGTTCAAAGACAAGTCCCTATGGAAGAGACATATTCGGAACGGGGAATGTACAGTTTACATTGCATGCGATTTATGCCCTGAGAAATTCGTGAATATGCAAGACTTTAATGACCACGCGTTACATGTCCACGCCGGCAGTTTCGATCCGGACAATCAGAACAAATGCATTGACGGCCGTCCCACAGATTGTCCTCAGTGCGGAAAGAAACTCCCCAATTATCCCCACCTGGTGAAACATCTGAAAATTATACACAACGAGGATAAACCGCATTACTGTCAAAATTGTGACGCTAAATTCGAGAATGCGCCTGATCTAAATAAGCATATTTACTCCGAGCATTCCAGTGAAGTCGCTGGAGCGCAACCCATTGAACCAGACATGTCCCTTGTTAAAGAAGAAGCGGAGGAATATCATTACTCATGCACAGAATGTAACGCCATATTCGAAACTGTAGACGCGTGGACAGACCACCAAGTTGCAGAACATAATCAAGTCGCCCATCACTGCGACCAATGTGAAAAGAAGTTCTTGCGTCCGTCCGAGCTAGCGGAACACAAAAATACACACTTGAGGGTGAAATTTTACCCTTGCAGTGTTTGCTCGAATTCTTACAGTACTCCTCAAAAACTATCCGAACACGTACAGCAGTCCCATCCCGGCGCCTCCGCTATGGCCGCTGCTGATTCCGAGTTCTTTTGTGACATTTGCATTAGATCATTCAAAAGTCGTCAGGCTTATTCTAACCACATGCGTATCCATGCTAAAGTTCCTACAACTAATAGAAAACCGGGTGACCCTAAAGGATTCGCTCCACAAATTATTGGAAAACCAATCCGCCAGTTCCCTATGATCCAACCAGGGTTCGTAGCATTCAAACCGAATTGTAACGTTCCTAACGCCCCTTACTGTTGTGACATATGTGGAAAAGGTTTCATGCACAAGAAAAATATTTGGAAACACAAGAAAGTTTTACATGCAGACCTCCTTAATGAGAGAAATGACAGTGAAGAAAACACAATGCAAGCTTCCACGGAAGAAGACGAATACAATGTCGATGAAAACGGTATCGCTTTATCTACACCACAGTTCAATAGTTTCAACTTTTCTAACTTTGCTAATAATGTGCAACAACAACAGCAACCTCAGCAACAAGCGCAGGCGGCACAAGCACAGGCGGGACAAGCAGCGGACGCCTTGCCTTTCTCGTGCGAACTATGCTTTAAACGTTTCCCGTTAAGAACGAGTCTATGGAAGCACAAACGCGCCAAACATGGCATCATTAATGCGAGCGCGTCTGGCAATCCCGAGAACCAGGCGCAACCATCTTCGGAAAGCGGCGGAAGGTCTAGTTGTACGATTTGCAAGATTACATTCTCGGATAAAAAGTCGTACTATCGCCATAGAAAGAATGTGCACAAATCCACCGCACAAATGTGTAAAATTTGTGGGAAACCACTGAACTCCACGTTGGAGTTGTATGAGCACTTAAAGGCTGCTCACGCTCGCGAATTATTAGGGTATAACGCCAACCAAGGCACAAGTAAAGCACAAGATATATCTCAGGAGGCGGAGTTGGAATACGAGGCCGAACCCGAAGTCGCGGACCCGAGCGCAGAGTATCAAGCTCGATATCCGTGCGACACGTGTGGAAAGCAATTTGTAGGGCTGCTCGCATTGCAAAACCACCAGTGTATAAATCAAACGGTTGCGGAACCACAAACGTTCGACTGCGAGATTTGTCACAAGAGTTACACCTCAATAGCCGCGTTGAAGAGTCACCGAGGGTGGCATTTACGCTCGCCTGACGGCAAGGCTGCCGCGAACAATAGCGGTTTGTGGATGCCTCAGCATAAGGTTACTAGCAAAGTGAGTAAACACGAGGTCGTGGATCCCTCCCAGCTCGCGAGGGTGACGCACTCGACCCCCACCGCAACTGCCACGACTAAAAGAAGACTGCCGCCTGAAGTCGAAGTGACTGTCGTAAATCCTAACAAGAAACTGAGGTCCGACGATTCGATGGAGCTCGAACAGCAGAACAGTTTGTCCGGCACCTTGGAAGATCGTTACTGTAATATATGTGACAAAGAATTTACAAAACGCGCGGCGTATCAGCGCCATATGGACGAAGTTCATCAGCCAAACTCTGTGTTCTGTCCAGTCTGCGACAAGAGCTTCACACGTAAGTCGACGCTGCTCGTCCATATGAAGAAACATTATGGAGGCGACGGCGAAGGTAGTTCTAGTGCGACCGGTCAACCGGACGAGGATATGTTTGGTTGTGACGTGTGCGGAACGCAGTTTAACAGCGACAATGCGCTACGAGCGCATCGTGCGCGTCATCACGGAGAGGAGGAGGAGGAATCGGACGACGACGGCAACGTGCCTTTGGCGCAGCCGGGCGAGTTCACTTGTGCTCAATGCGGCGACGGCGTGGCCACGCCGCGCGACCTGATCGCCCACCGAACCATGCACGCGACCCCGACCAAATTCTTCTGCAACATTTGCAAAGTTTACTTCGCGAGGGCCCTGGACCTGTCTTCCCACACCCGCGCCAGGCATTCCGACAACGAAAAAGTGTTCTTCCCTTGTGCCATGTGCGACCGCTTCTACATGAACAAGAAGAGTTTACAACGACACATCGAGATGTCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSGDSEPHVLASKIRDCVAVQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGSYNEVAGSSKVQPEGPPILASLGLTPRSDKGVESEKDEEDEEDEEMMEPAQQYTKVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINTIKKPKSHMQPKLRLNPFNPKARLMPNPINHKQFQKPMPSRIMPSRVVAPPKPIPIKNAKPVQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPYDQNQEEEEEADESQNQNQHYDTVDMESDNEIEIARQQENDGDMDDNQEEHDGEDNLQQDNEHMETMEGEMSDNENGQQEEDDEHGDSQGDITIDEHNDIQGEDAERDNGEDNGEREDDQEDGNDAEDNENEEEDLPPGLAPVVEINEDMQTNSYNSEQNEDEEQELDESAANETLEEADKEIDPDKIYVTKTQRDFINKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGKKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEEGITDDLVISDRKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPQCGKKLPNYPHLVKHLKIIHNEDKPHYCQNCDAKFENAPDLNKHIYSEHSSEVAGAQPIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAMAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIIGKPIRQFPMIQPGFVAFKPNCNVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEENTMQASTEEDEYNVDENGIALSTPQFNSFNFSNFANNVQQQQQPQQQAQAAQAQAGQAADALPFSCELCFKRFPLRTSLWKHKRAKHGIINASASGNPENQAQPSSESGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEAELEYEAEPEVADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTVAEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEQQNSLSGTLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSATGQPDEDMFGCDVCGTQFNSDNALRAHRARHHGEEEEESDDDGNVPLAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00680834;
80% Identity: -