Atur043367.2
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990300.1:5274728-5291076[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.2e-11 4e-07 31.2 0.1 7 44 192 231 188 232 0.84 2 3 9.7e-11 6.3e-07 30.6 0.1 8 44 231 269 230 270 0.84 3 3 4.4e-16 2.9e-12 47.7 0.0 8 70 269 329 268 334 0.87
Sequence Information
- Coding Sequence
- ATGTCCGACGAAATGGCGGTTTGCGATAACCCAAGTGGGGAAGAAGCCGTCGTAAATGGAGCCGAGGCGTTGCGAACGAGTGCCGAGGACGCGGCGCCGGAGGCCCCCGAGCCTACGAGCGCCCCCGCAGGACCGGACCCTGAAGAATCCAACCCAATCAAAACAGAACCTGAATCATCAGAAGATGCCGAACCCACTGAAGAGGCTGACGAGAAACGGGGAGTCAAACGCAGAGCGTCGGCAGCATTCAGCACTGTTGCCGATGACGACTTTAAAGGCTTCGTCAAGGGTGAATTGGACAACTCCATCGTTGAATACCAGCGAGTTCTGGATAACCTGGAGGCAGAGGTGGCGGCGGCCAGTAAAACAGTGGTGCCTCTTAGGACAGTCATGGGGACTCCGACAGCTCCACCCAGGGCCAGTAAACGAGCCAGGCAAGATACAGaTGGATCAAGACCCTCATCGGCCCAATCCACCAGATCCGATGGTGATGGAGCAACATCTTCAACTGAGGTGGGGTCGTCCCCGGCGGTCCGCGGGCGGCGCGCCACCACCGAGATCTCGTCCCCGCTGCTCAGGGTGCCGCTGGAGCGGGGCTGGAAGCGGGAGCTCGTGTTCCGAGCCGCGCTCGACCAGCACTCGCGCCGCAACGCCGACATATACTACTACACGCCGCAGGGCAAGAAGCTGAGGGTGCCGCTGGAGCGGGGCTGGAAGCGGGAGCTCGTGTTCCGAGCCGCGCTCGACCAGCACTCGCGCCGCAACGCCGACATATACTACTACACGCCGCAGGGCAAGAAGCTGAGGGTGCCGCTGGAGCGGGGCTGGAAGCGGGAGCTCGTGTTCCGAGCCGCGCTCGACCAGCACTCGCGCCGCAACGCCGACATATACTACTACACGCCGCAGGGCAAGAAGCTGAGGTCTACTAGAGAGGTAGCGGAACACCTCTCGGGGACCGGCTTGTCATTAGAGAACTTTTCGTTCTTCAAGGAACCACTGGGTGTAGATGACCCCGAAAAAGAAATAATTCGTGACGCGAAGTTGATGCGGCGCGTGGAGTCGCCGGTGGCGCAGACGGCGCCGGCGGCGGACAGCAAGCGCACGCCCAAGCCCAAGGCTCCCAAGGGCGCCAGCCCGGAGCCGGCCAAGCAGAAGTCGCCGCCTGCCAAGATCAAGGTGAAGTCGATGCAGCCGCGCCTGTCccgcgcgccggccgcgcccgcgcccacTCCTCCCGCCAAGAAGCCCGCGCCCGCCGACAACAACAACACGCAAGCTTGGAAGAAAAACAGGTATTTATACGACACGCAGCGGCGCAGGGAAGGCTAA
- Protein Sequence
- MSDEMAVCDNPSGEEAVVNGAEALRTSAEDAAPEAPEPTSAPAGPDPEESNPIKTEPESSEDAEPTEEADEKRGVKRRASAAFSTVADDDFKGFVKGELDNSIVEYQRVLDNLEAEVAAASKTVVPLRTVMGTPTAPPRASKRARQDTDGSRPSSAQSTRSDGDGATSSTEVGSSPAVRGRRATTEISSPLLRVPLERGWKRELVFRAALDQHSRRNADIYYYTPQGKKLRVPLERGWKRELVFRAALDQHSRRNADIYYYTPQGKKLRVPLERGWKRELVFRAALDQHSRRNADIYYYTPQGKKLRSTREVAEHLSGTGLSLENFSFFKEPLGVDDPEKEIIRDAKLMRRVESPVAQTAPAADSKRTPKPKAPKGASPEPAKQKSPPAKIKVKSMQPRLSRAPAAPAPTPPAKKPAPADNNNTQAWKKNRYLYDTQRRREG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148490;
- 90% Identity
- -
- 80% Identity
- -