Atur041371.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- PAX1
- Assembly
- GCA_905147355.1
- Location
- LR990298.1:21307101-21311335[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 7.4e-68 3.6e-64 216.0 0.2 3 125 28 150 26 150 0.99 2 8 0.00023 1.1 10.8 0.0 99 125 233 259 212 259 0.88 3 8 0.09 4.4e+02 2.4 0.0 104 124 353 373 327 374 0.81 4 8 0.11 5.4e+02 2.2 0.0 104 125 496 517 482 517 0.86 5 8 0.052 2.6e+02 3.2 0.0 111 125 648 662 638 662 0.88 6 8 0.24 1.2e+03 1.1 0.0 108 125 700 717 694 717 0.84 7 8 0.0062 31 6.2 0.0 99 125 778 804 760 804 0.88 8 8 0.02 99 4.5 0.0 105 125 886 906 873 906 0.88
Sequence Information
- Coding Sequence
- ATGCCTGATTACTTTGTATTTGTCCATGCAGATCCAAGCGGAGGGTCTCTCGGCGGCGCGGTGGGCGGGTCGCAGCAGTACGGCGAGGTGAACCAGCTCGGCGGCGTGTTCGTCAACGGGCGGCCGCTGCCGAACGCCGTGCGCTTGCGGATAGTCGAGCTGGCGCAGCTTGGGATAAGGCCCTGCGACATCAGCCGGCAGCTACGAGTGTCCCACGGCTGCGTGTCCAAGATCCTGGCGCGATACCACGAGACCGGGTCCATCCTGCCCGGCGCCATCGGCGGCTCCAAGCCGCGTGTCACCACGCCGAAGGTGGTGTCATACATAAAGCAACTGAAAGCAAAAGACCCCGGCATCTTCGCGTGGGAGATCCGCGACCGACTCCTGGCGGACGGCGTCTGCGACAAGTACAACGTGCCATCCGTGTCGTCCATATCCCGCATCCTGCGCAACAAGCTGGGCGGCGCGCTGTACCCCGTGCCGCCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGCCCTACGACTACTACGTCTATCTACAGGTTGGTACAGTACAGCAAGCACAACGTGCCCTCCGTGTCGTCCATATCCCGCATCCTGCGCAACAAGCTGGGCGGCGCGCAGTACCCCGTGCCGCCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGCCCTACGACTACTACTTCTATCTACAGGTTGGTACAGCAAGCACAACGTGCCCTCCGTGTCGTCCATATCCCGCATCCTGCGCAACAAGCTGGGCGGCGCGCAGTACCCCGTGCCGCCGCTGTACCCCGTGCCGCCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGCCCTACGACTACTACGTCTATCTACAGGTTGGTACAGTACAGCAAGCACAACGTGCCCTCTGTGTCGTCCATATCCCGCATCCTGCGCAACAAGCTGGGCGGCGCGCTGTACCCCGTGCCGCCGCTGTATCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCACCCCTACGACTGCTACGTCTATCTACAGGTTGCTACAGCACGCACAACGTGCCCTCCGAGTCGTCCATATCCCGCATCCCACGCAACAAGCTGGGTGGCGCGTTGTACCCCGTGCCGCCGCAGCGCTGCTGGGCGCTGCACCAACCCTACGACTACTACGTCTATCTACAGGTTGGTACAGCAAGCACAACGTGTCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGTGGCGCGTTGTACCCCGTGCCGCCGCAGCGCTGCTGGGCGCTGCACCAGCCCTACGACTACTACTTCTATCTACAGGTTGGTACAGCAAGCACAACGCTCCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGCGGAGCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGTCCTACGACTGCTACGTCTATCTACAGGTTGGTACAGCAAGCACAACGTGTCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGTGGCGCGTTGTACCCCGTGCCGCCGCAGCGCTGCTGGGCACTGCACCAGCCCTACGACTACTACGTCTATCTACAGGTTGGTACAGCAAGCGCAACGTGTCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGTGGCGCGTTGTACCCCGTGCCGCCGCAGCGCTGCTGGGCGCTGCACCAGCCCTACGACTACTACGTCTATCTACAGGTTGGTACAGCAAGCACAACGTGTCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGTGGCGCTTTGTACCCCGTGCCGCCGCAGCGCTGCTGGGCGCTGCACCATCCCTACGACTACTACATCTATCTACAGGTTGGTACAGTACAGCAAGCACAAACGTGCCCTCCGAGTCGTCCATATCACGCATCCTACGCAACAAGCTGGGCGGCGCGTTGTACCCCGTGCCGCCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGCCCTACGACTACTACGTCTATCTACAGGTTGGTTGGTACAGCAAGCACAACGTGTCCTCCGAGTCGTCCATATCCCGCATCCTACGCAATAAGCTGGGCGGCGCGCTGTACCCCGTGCCGCCACTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGCCCTACGACTACTACGTCTATCTACAGGCTGGGCGGCGCGCTGTACCCCGTGCCGCCACTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCACTGCACCAGCCCTACGACTACTACTTCTATCTACAGGTTGGTACAGCAAGCACAACGCTCCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGCGGAGCGCTGTACCCCGTGCCGCCGCAGCGCTGCTGGCCGCTGCACCAGTCCTACGACTGCTACGTCTATCTACAGGTTGGTACAGCAAGCACAACGTGCCCTCCGAGTCGTCCATATCCCGCATCCTACGCAACAAGCTGGGTGGCGCGCTGTACCCCGTGCCGCCACTGTACCCCGTGCCGCCGCAACGCTGCTGGCCGCTGCACCAGCCCTACGACTACTATGTCTATATCTACAGGTTGGTACAGCAAGCGCAACGTGCCCTCCGAGTCGTCCATATCTCGCATTCTACGCAACAAGCTGGGCGGCGCGCTGTACCCCGTGCCGCCGCTGTACCCCGTGCAGCCCAACAGCCCTACGACTACTACGTCTATCTACAGATGTTTGAAGGCACCGAAAATTCACGTGTGTCCTCCACAGGGGCGGCAGCACGCAGGCGGGGCGCCGCACGGCCTCCACCCGCACCagcagcccgcgccgccgcatcacgcgcacgcgcacgcgctcTGA
- Protein Sequence
- MPDYFVFVHADPSGGSLGGAVGGSQQYGEVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKLGGALYPVPPLYPVPPQRCWPLHQPYDYYVYLQVGTVQQAQRALRVVHIPHPAQQAGRRAVPRAAAVPRAAAALLAAAPALRLLLLSTGWYSKHNVPSVSSISRILRNKLGGAQYPVPPLYPVPPLYPVPPQRCWPLHQPYDYYVYLQVGTVQQAQRALCVVHIPHPAQQAGRRAVPRAAAVSRAAAALLAAAPPLRLLRLSTGCYSTHNVPSESSISRIPRNKLGGALYPVPPQRCWALHQPYDYYVYLQVGTASTTCPPSRPYPASYATSWVARCTPCRRSAAGRCTSPTTTTSIYRLVQQAQRSLRVVHIPHPTQQAGRSAVPRAAAALLAAAPVLRLLRLSTGWYSKHNVSSESSISRILRNKLGGALYPVPPQRCWALHQPYDYYVYLQVGTASATCPPSRPYPASYATSWVARCTPCRRSAAGRCTSPTTTTSIYRLVQQAQRVLRVVHIPHPTQQAGWRFVPRAAAALLGAAPSLRLLHLSTGWYSTASTNVPSESSISRILRNKLGGALYPVPPLYPVPPQRCWPLHQPYDYYVYLQVGWYSKHNVSSESSISRILRNKLGGALYPVPPLYPVPPQRCWPLHQPYDYYVYLQAGRRAVPRAATVPRAAAALLATAPALRLLLLSTGWYSKHNAPSESSISRILRNKLGGALYPVPPQRCWPLHQSYDCYVYLQVGTASTTCPPSRPYPASYATSWVARCTPCRHCTPCRRNAAGRCTSPTTTMSISTGWYSKRNVPSESSISRILRNKLGGALYPVPPLYPVQPNSPTTTTSIYRCLKAPKIHVCPPQGRQHAGGAPHGLHPHQQPAPPHHAHAHAL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -