Atur033322.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990294.1:2112975-2133546[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-11 8.7e-08 33.4 0.0 4 39 171 207 168 211 0.89 2 4 1.2e-11 1.3e-08 36.0 0.2 2 39 223 260 222 263 0.92 3 4 5.6e-14 6.5e-11 43.4 0.0 4 45 280 322 277 322 0.96 4 4 4.6e-18 5.3e-15 56.5 0.0 1 43 329 372 329 374 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTCTCCCGCAGGTCAAGCGCGAGCCGGCCTCCGACGACGACAGCGATTCGCAGTTCGCACACGGCTTCCTCTCCAATCAGATACCGTCACTGGAGCTGCGGCCGGTGAAGCTCGAGGCCATCGACGATAATGCGTCTGCGCACATCCTGTGTCACTTGCAGGGTTCCGAAAGCCTGGAGGAGCTGGCCCCGCTGGCGCCCGCGGCCCCCTCCGCCACCCCTGTCAGCGTCAAGCAGGAGCCCGCGGAACCTGCCGTGACGTTGGAGACCCTCGCGCCGGCTCCACATGCAGACACGTTGGGTTCCATGCTCATCGACAGACACAAGACTCTGCCGGGCGCGAACGACGCTGACTCCATGGACTTCATGCCTCTCCTAGCTGTCAAAGATGAACCTCTGTCGGAAGGAGAACAACACCACTTGAGTGGATCAGACACTAGTGACTCCAGCACACACCCGGAACCACCCCGCGGCAGCCCCAAGAACTGGACGCAGCAGGACATGGAACTGGCCTTGGAAGCGCTAAGGACACATAACATGAGCCTTACTAAGGCGTCAGCAACATACGGCATCCCGTCAACAACTCTTTGGCAGAGAGCGCACCGGCTGGGCATTGACACGCCCAAGAAGGAAGGAGCTTCGAAGTCGTGGAGCGAGGCGGACCTGCGCGGCGCCCTGCATGCCTTGAGGTCCGGAGCCATATCTGCCAACAAGGCTAGCAAGGCTTACGGCATTCCTAGCAGCACGCTATACAAGATCGCACGCCGCGAAGGCATCCGCCTGGCGGCGCCCTTCAACGCCGCGCCGACCGCGTGGCGCCGCTCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCTCGCAGTTCGGCATACCCACAGGGACACTGTATGGGCGGTGTAAGCGAGAAGGCATCGAGCTATCTCGGTCCAATCCAACTCCCTGGTCAGAAGACGCTATGGGCGAAGCGCTGGAAGCGGTTAGGGTGGGTCAAATGTCAATAAACCAAGCTGCGATCCACTATAATTTACCTTATTCATCGTTGTACGGGCGATTCAAGAGGTGTAAATATCAGAGCCCTCAAGTGCTCCCCCAACAACCCCTGCCGGAGAGCATGGAGATGGAGGCGACTCCGGCGCACGCGTACTACCAGCAGCAGCTGCCAACAGCTCCAGAAGAATACCATCACAGCCTCCACGGCTACCTGCCGACCGAGCCGGACATGCACAGTAGCATGCTACAGGACCATGCGGGCATGCAGGGCTACGGAATGTACTACCAAGGTTGTGCGGCCCTTGTGGATTCGTTCAAAGAACAAGAAAAGGTCTACAACAGTAGCCACTCGATTGAGAGTGCGAAGCGCTCTGGTGGTGGGTGCCTGGCGCAGCAATTGCGTTCTGGCTTGCGGCTCGGCGAGCAGGCTGGGTCGCTGCCGCCGCCACACGTACCTCTGCGGGACGTACGTACAATAGAGAAGATACAAACGAACCTGCGCCTCAGTTCATGA
- Protein Sequence
- MPGRGLPQVKREPASDDDSDSQFAHGFLSNQIPSLELRPVKLEAIDDNASAHILCHLQGSESLEELAPLAPAAPSATPVSVKQEPAEPAVTLETLAPAPHADTLGSMLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTHPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRSDLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQVLPQQPLPESMEMEATPAHAYYQQQLPTAPEEYHHSLHGYLPTEPDMHSSMLQDHAGMQGYGMYYQGCAALVDSFKEQEKVYNSSHSIESAKRSGGGCLAQQLRSGLRLGEQAGSLPPPHVPLRDVRTIEKIQTNLRLSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00680441;
- 80% Identity
- -