Acap005182.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392508.1:17475398-17477606[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0069 37 5.6 0.0 7 39 46 78 44 83 0.82 2 10 0.0067 35 5.6 0.0 7 39 97 129 94 134 0.82 3 10 0.0067 35 5.6 0.0 7 39 148 180 145 185 0.82 4 10 0.0067 35 5.6 0.0 7 39 199 231 196 236 0.82 5 10 0.0067 35 5.6 0.0 7 39 250 282 247 287 0.82 6 10 0.0067 35 5.6 0.0 7 39 301 333 298 338 0.82 7 10 0.0067 35 5.6 0.0 7 39 352 384 349 389 0.82 8 10 0.0067 35 5.6 0.0 7 39 403 435 400 440 0.82 9 10 0.0066 35 5.7 0.0 7 39 454 486 451 492 0.83 10 10 0.066 3.5e+02 2.5 0.0 7 27 505 525 501 532 0.75
Sequence Information
- Coding Sequence
- ATGCAACAATACGAAGGAGTGAGATGGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGTCGTCCTCGGGCTCGTCGTCGCTGCCGGCCGCGCTGCCGTCGAGACTCTCGCCCTCTCGCTCTTCTCCCAGTGTCCGCGCTGTTCACATCGTGCTACTCACCTCGTCGCTCAGGTACCCGTGCGGCACGAACACCTCGTTGTCGACCTCGTAG
- Protein Sequence
- MQQYEGVRWVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQVPVRHEHLVVDLVVVLGLVVAAGRAAVETLALSLFSQCPRCSHRATHLVAQSSSGSSSLPAALPSRLSPSRSSPSVRAVHIVLLTSSLRYPCGTNTSLSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -