Basic Information

Insect: Apotomis capreana
Gene Symbol: PLAGL2
Assembly: GCA_947623375.1
Location: OX392518.1:10814938-10816422[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.8e-05 0.008 17.6 1.0 1 23 101 123 101 123 0.96

2 7 9.2e-05 0.0084 17.5 1.8 1 23 129 151 129 151 0.96

3 7 5.5e-08 5.1e-06 27.6 1.8 1 23 157 179 157 179 0.97

4 7 0.0095 0.87 11.2 0.6 1 23 186 210 186 210 0.94

5 7 0.00042 0.039 15.4 0.2 2 23 218 239 217 239 0.97

6 7 0.00012 0.011 17.2 1.6 1 23 253 275 253 275 0.97

7 7 3.5e-05 0.0032 18.8 2.4 1 23 281 304 281 304 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.8e-05	0.008	17.6	1.0	1	23	101	123	101	123	0.96
2	7	9.2e-05	0.0084	17.5	1.8	1	23	129	151	129	151	0.96
3	7	5.5e-08	5.1e-06	27.6	1.8	1	23	157	179	157	179	0.97
4	7	0.0095	0.87	11.2	0.6	1	23	186	210	186	210	0.94
5	7	0.00042	0.039	15.4	0.2	2	23	218	239	217	239	0.97
6	7	0.00012	0.011	17.2	1.6	1	23	253	275	253	275	0.97
7	7	3.5e-05	0.0032	18.8	2.4	1	23	281	304	281	304	0.94

Sequence Information

Coding Sequence: ATGGCCAGTCCGCCTCCGAACCCTAAAGCTGGCGGGGACGACGGCGGCGGGCGGGGCGAGGGCGAGGAGCAGCCGCCCGCCTCGCCGAAGACGTGCGTAGCGCCGCCAGCCTCGCAGCACGGCACCAAGCTGCACTATGTGGCGCTAACCGCACCCGGGCCCAGTGGAATCAAGCAGTGCTTCCGCACCGTCAAGGCGGCGCGGCGGGTACCCACGCTGCCGCGGCGGCGAGAGGAACCCGAGGTCGTGACGCCGCCCGAGCCGCGCGAGCGCCGCGCGCGCCGCGACCGCTCCAAGCGCCACATCTGCGGCTCCTGCGACAAGCGCTTTTCCAGCCCCGGCAAGCTCAGCCAGCACCTCCTGTCCCACACCGGCGAGCTCCCCTTCTCCTGCGACCTCTGCGACAAGCGGTTTAACTCCAAATTCAAACTCGTCCGACACAATCTAATCCACAGCGAGGCACGGGCTTTTGCATGCAGTGTCTGCGGTAAAACATTCAATCGAAAAGACCACCTTACCAATCATGTCAGAGTACACAATCCTGTTAAAAAGCTGTATACATGTGAGAGGCCTGACTGTAGGAAGTCATACACTTCCTTGCTTAGTTATAGGAAGCATGCCGCGCTGCATTCGGCCGAGGAAGGCAACCTGCAGTGCAAGATCTGTGATGAAGTTTTTACTACCACACAAGATATAGTTTATCATTTAAAAGTCCATACAGGTAGTCGGACAGTAAAGAATGAGACTGACAAGAAATTTACTTGTAACTATTGTGAGCGACGGTTCTTTACTGCAAAAGACGTGCGTCGTCACCAAGTAGTTCACACAGGCCGCAGAGATTTCTTGTGCCCCCACTGTCCTCAGAAATTTGGACGAAAGGATCATCTAGTTCGACATGTTAAGAATGCCCACCCAGAGGAGTCTTGGAGATCAGCTGCCGTTGGGACTTCTAGTGACCCTACCCCTGAAAGCTCCTCATTTGATGAAATTGTTATCCCAGAGCCCACAACCTTTGCAGAGTTCACAATAGAGGGTACAGAGTATTGGAAGTCACCCTCTCCAGAAGACAGCACACCAGAAGGCCCAACCAGGGTGCCCTCATCTGATATAATAGTGGATGTTCCGCCTGTTTTCGATATAAAGATGGAGCCGGTTGAAATTAAAATTGAGAGGCCACAGTCGCCGGGCTGCGAGCTTCTTCCGATGGAGTTTCCGGTGGTGTTTATGGTGCCGCCGCAGTACCAGGCGCCGCCTGACTTGCCGTACCTCACAGAGCCGCTGCCAGAGTTGCTGCCAAGCGGGTTAATGCTTGATGACCCAGGGGAAGGGCCGTCGGGCCTGTCGTCACAGATGCTGGGGATTTTGGAAGAGGAGGAGCCTCGGGAAGAGCCCGGACAGCAGCGGCAGCGCTTGCCGGCATTCACGCAGGCCTTCCAGACCGCACAAAGCCCCAAGCCGCCGCCGCCACCGCCGCCGCCCCACTAG
Protein Sequence: MASPPPNPKAGGDDGGGRGEGEEQPPASPKTCVAPPASQHGTKLHYVALTAPGPSGIKQCFRTVKAARRVPTLPRRREEPEVVTPPEPRERRARRDRSKRHICGSCDKRFSSPGKLSQHLLSHTGELPFSCDLCDKRFNSKFKLVRHNLIHSEARAFACSVCGKTFNRKDHLTNHVRVHNPVKKLYTCERPDCRKSYTSLLSYRKHAALHSAEEGNLQCKICDEVFTTTQDIVYHLKVHTGSRTVKNETDKKFTCNYCERRFFTAKDVRRHQVVHTGRRDFLCPHCPQKFGRKDHLVRHVKNAHPEESWRSAAVGTSSDPTPESSSFDEIVIPEPTTFAEFTIEGTEYWKSPSPEDSTPEGPTRVPSSDIIVDVPPVFDIKMEPVEIKIERPQSPGCELLPMEFPVVFMVPPQYQAPPDLPYLTEPLPELLPSGLMLDDPGEGPSGLSSQMLGILEEEEPREEPGQQRQRLPAFTQAFQTAQSPKPPPPPPPPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654642;
90% Identity: iTF_00871680;
80% Identity: -