Acap008898.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- PBRM1
- Assembly
- GCA_947623375.1
- Location
- OX392519.1:7544717-7575974[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.4e-14 8.4e-11 43.2 0.0 6 60 458 512 454 519 0.92 2 15 0.032 32 6.0 0.1 38 60 545 567 542 574 0.85 3 15 0.032 32 6.0 0.1 38 60 600 622 597 629 0.85 4 15 0.031 31 6.1 0.1 38 60 655 677 651 684 0.86 5 15 0.031 31 6.1 0.1 38 60 710 732 706 739 0.86 6 15 0.031 31 6.1 0.1 38 60 765 787 761 794 0.86 7 15 0.031 31 6.1 0.1 38 60 820 842 816 849 0.86 8 15 0.031 31 6.1 0.1 38 60 875 897 871 904 0.86 9 15 0.031 31 6.1 0.1 38 60 930 952 926 959 0.86 10 15 0.031 31 6.1 0.1 38 60 985 1007 981 1014 0.86 11 15 0.031 31 6.1 0.1 38 60 1040 1062 1036 1069 0.86 12 15 0.031 31 6.1 0.1 38 60 1095 1117 1091 1124 0.86 13 15 0.031 31 6.1 0.1 38 60 1150 1172 1146 1179 0.86 14 15 0.031 31 6.1 0.1 38 60 1205 1227 1201 1234 0.86 15 15 0.031 31 6.1 0.1 38 60 1260 1282 1256 1289 0.86
Sequence Information
- Coding Sequence
- ATGCCATCCGGCGGCGCTCCGCAGCCACAGACTAAGTACGACAAGGGAGATTTCCTGTATGTACAACCGGATAAGAGCAACAAGGACCCTGCCATCGTCCAGGCTGTGCGGATATGGACCAACACTGATGGTGTACCCATGATGTACGCCAACGTCTACTTCCGGCCTCAAGAAACTTTCCACGTGCGGACGCGGAAGTTCCTGCAACAGGAGGTGTTCAAAACTGAAACTCACCGCAACATCCCGCTCGATCAGATCGCGGGGCACTGCTATGTCATGAACGTCAAGGAGTACTTCAAGTTCAAGCCTGAAGGTTACGCCGATAAGGACGTGTATGTATGCGAGAGCCGGTACAACTCAAAGCACCGCTGGTTCAAGAAAATCAAGGTCTGGGAGGGGGCGGAGAAGGAAGCGACTTTAGTCCCAAGAGATGTACCCCTAGAGCCTAACAGGACAGTGTCCGTGTTCCGTGAACGCGTCGAGAAACACAAGGACGAGCTGGCTGAATTGGAAATACTCGAAAACGTCCAGGAGAAAGAGAGACCCGATGTGGTGATGTACAATCCACTCGGAACTGATGACGAGAACACGTACTACGAGCAGTATAATACCGTGTGCTCTGGAGTCATCAAGACTGGCGATTATGTCTACGTGGTGACCGACGGTGGCAAGCAGATGATCGCGCAAGTCGACACCATTTGGGAGACTGGAGACAATAAATGCTATTTCCGCGGCCCGTTCCTAATCTTCCCATCAGAAGTGGTCAACATCATTAACAAACCGTTCTACAAGCAAGAGGTGCTTCTAACGACGATGCACGACACCAGTCCACTGGTGGGCATCGTTGGCAAGTGCTCCGTACTCGACTACGACGATTATTTGAAGTGCCGCCCTACAGAAATATCTGAGAACGACGTGTTTGTCTGCGAATCCCTGTACGACGAGTCCAACCGCGTGGCGCGCAAGCTGAAGGCCGGCCTGCGCAAGTTCGAGCACACCAAGGAAGTGACTGTCGACGAGATCTACTACTTCTCGAAGCCGCTGGGCCCGCCCGCGCTGGCGAGCTCTCAGGACGTGCAGCACACCTTCGCGCAGAAACCGTTCAACCCCGTCAACATCGACTCCATGGACGGTAGCAAGCCGCAGTTTACCAACCTCATCAACACCACTATAGGCAGCCAGGATGTGGAAATGTTGCTGGAGAATTCTCTGGATGACTCTTCGTTGGCGTCCCCAGCCACACCGCTATCTATAGGCGGCAACAGCAACCCATACAACCCATCCATGTCCACCGCGCACGAGCGTGCGCCGGCGCAGACCGCCACGCCCGCCACCGGCAAGAAGAAGAAAGAACAGAAGCAGAAGATCGTGACCGGCTACATCCTCTACTCGAGCGAGGTCAGGAAGGCCATCATCGCGAACAACCCGGAATCCACTTTCGGCGAAATCTCCCGGATCGTAGGCAACGAGTGGCGGTCGCTGCCGGCGGCCACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGGGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGGGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGTAACGTATACCGCATTATACCGAGACAGGCTGCTCGAGCCATGTCTCAGCGAGTGGCGGTCGCTGCCGGCACACACCAAGCAGAGCTGGGAGGAGCGCGCCGCGCGCTGCAACGAGGAGACCTCCGCCAGGATCGCGGAGGAGATGCGAGAGCTGTCGCAAAACGCGAGTATGGAGATGACGTACGAATGCGCTTGGGACACTTGCGACTACCAGTTCGAAGACTTGGCGGATTGCATGGAGCATTGCATCGGCGACGGAGGGAACACGGGGCACGTGCAGCAACACTACCGCGGCGCCACCGGCGACTACCCCTGCGTGTGGCGGAACTGCGCGCGCGTGCGCAAGGGACAGGCGCCCTTCCCCAACCTGCCGCGGCTGCTGCGCCACGTGCGGGACCTCCACGTCAACAAGGGCAACGGACGGCCTGTCCACATACACGAGCGTTCCAGGTAA
- Protein Sequence
- MPSGGAPQPQTKYDKGDFLYVQPDKSNKDPAIVQAVRIWTNTDGVPMMYANVYFRPQETFHVRTRKFLQQEVFKTETHRNIPLDQIAGHCYVMNVKEYFKFKPEGYADKDVYVCESRYNSKHRWFKKIKVWEGAEKEATLVPRDVPLEPNRTVSVFRERVEKHKDELAELEILENVQEKERPDVVMYNPLGTDDENTYYEQYNTVCSGVIKTGDYVYVVTDGGKQMIAQVDTIWETGDNKCYFRGPFLIFPSEVVNIINKPFYKQEVLLTTMHDTSPLVGIVGKCSVLDYDDYLKCRPTEISENDVFVCESLYDESNRVARKLKAGLRKFEHTKEVTVDEIYYFSKPLGPPALASSQDVQHTFAQKPFNPVNIDSMDGSKPQFTNLINTTIGSQDVEMLLENSLDDSSLASPATPLSIGGNSNPYNPSMSTAHERAPAQTATPATGKKKKEQKQKIVTGYILYSSEVRKAIIANNPESTFGEISRIVGNEWRSLPAATKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLGPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLGPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNVTYTALYRDRLLEPCLSEWRSLPAHTKQSWEERAARCNEETSARIAEEMRELSQNASMEMTYECAWDTCDYQFEDLADCMEHCIGDGGNTGHVQQHYRGATGDYPCVWRNCARVRKGQAPFPNLPRLLRHVRDLHVNKGNGRPVHIHERSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -