Acap013547.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392510.1:24539344-24556363[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-11 4.9e-08 33.6 0.0 4 39 171 207 168 211 0.89 2 4 3e-12 7.4e-09 36.2 0.2 2 39 223 260 222 263 0.92 3 4 1.5e-14 3.6e-11 43.6 0.0 4 45 280 322 277 322 0.96 4 4 1.2e-18 3e-15 56.7 0.0 1 43 329 372 329 374 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTCTCCCGCAGGTCAAGTGCGAGCCGGCCTCCGACGACGACAGCGACTCGCAGTTCGCACACGGCTTCCTCTCCAATCAGATACCGTCACTGGAGCTGCGGCCGGTGAAGCTCGAGGCCATCGACGATAATGCGTCTGCGCACATCCTGTGTCACTTGCAGGGTTCCGAAAGCCTGGAGGAGTTGGCCCCGCTGGCGCCCGCGGCCCCCTCCGCCACCCCCGTCAGCGTCAAGCAGGAGCCCGCGGAACCAGCCGTGACGTTGGAGACCCTCGCGCCGGCTCCTCATGCAGACACGCTGGGTTCCATGCTCATCGACAGACACAAGACTCTGCCGGGCGCGAACGACGCTGACTCCATGGACTTCATGCCTCTCCTAGCTGTCAAAGATGAACCTCTGTCGGAAGGAGAACAACACCACTTGAGTGGATCAGACACTAGTGACTCCAGCACACACCCGGAACCGCCCCGCGGCAGCCCCAAGAACTGGACGCAGCAGGACATGGAACTGGCCTTGGAAGCGCTAAGGACACATAACATGAGCCTTACTAAGGCGTCAGCAACATACGGCATCCCGTCGACAACTCTTTGGCAGAGAGCGCACCGGCTGGGCATTGACACGCCCAAGAAGGAAGGAGCTTCGAAGTCGTGGAGCGAGGCGGACCTGCGCGGCGCCCTGCATGCCTTGCGGTCCGGAGCGATATCTGCCAACAAGGCCAGCAAGGCTTACGGCATTCCTAGCAGCACGCTATACAAGATCGCACGCCGCGAAGGCATCCGCCTGGCGGCGCCCTTCAACGCCGCGCCGACCGCGTGGCGCCGCTCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCTCGCAGTTCGGCATCCCCACAGGCACACTGTATGGGCGGTGTAAGCGAGAAGGCATCGAGCTATCTCGGTCCAATCCAACTCCCTGGTCCGAAGACGCCATGGGCGAAGCGCTGGAAGCGGTCAGGGTGGGTCAAATGTCAATAAACCAAGCAGCGATCCACTATAATTTACCTTATTCATCGTTGTACGGGCGATTCAAGAGGTGTAAATATCAGAGCCCTCAAGTAATCCCCCAACAGCCCCTGCCGGAGGGCATGGAGATGGAGGCGACTCCGGCGCACGCGTACTACCAGCAGCAGCTGCCGACAGCTCACGAGGCATACCAGCACAGCCTCCACGGCCACCTGCCGGCCGAGCCGGACATGCACAGCAGCATGCTCCAGGACCATGCGGGCATGCAGGGCTACGGAATGTACTACCAAGGGGTAGTGCAAACAAATCCTCATTCCGATGAAAACATTTTGAAGTCTAGGACTCCAACCGATTCTGTGGAGATCTCGGATCTGAAGGGGTGA
- Protein Sequence
- MPGRGLPQVKCEPASDDDSDSQFAHGFLSNQIPSLELRPVKLEAIDDNASAHILCHLQGSESLEELAPLAPAAPSATPVSVKQEPAEPAVTLETLAPAPHADTLGSMLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTHPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRSDLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQVIPQQPLPEGMEMEATPAHAYYQQQLPTAHEAYQHSLHGHLPAEPDMHSSMLQDHAGMQGYGMYYQGVVQTNPHSDENILKSRTPTDSVEISDLKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00680441;
- 80% Identity
- -