Anig003718.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382300.1:18367794-18369179[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-11 3.7e-09 36.8 0.0 1 37 15 51 15 57 0.94 2 2 8.9 1.3e+03 -0.2 0.0 22 30 142 150 131 151 0.78
Sequence Information
- Coding Sequence
- ATGCCACGTAATTATGTTAGATCTACCCTGCGGGCATTTTGGTCTGAAACTGACCTGGATGAGGCCATGAAAAAAGTTCGTCAGAAAAAAATGGGTGTTAATGAGGCAGCACGAACATACAATATTCCTTCAAGAACACTGAGGAGACATCTTTTATCTGGAACATTGAAGGTTGGGCTTGGAAGAAGGCCTGTTTTTAACCAAGCGGAGGAAAAAAAGTTGGTTGCGCACATCAAACAACTCGAAAAAGTTGGATTTGCACCAGATCGGAAGGATGTTAAAGAAATGGCGTATCAATTAGCTCAGAAGCTTAACATCAAAAATATTTTTTCTGATACGTCTAGAAAAGCTGGAGATGTTTGGTTTACCGGATTTTTAAACAGGAACCCAGAGTTGAGTCAACGAAAATCCGAAGGTTTGTCTCTTGCAAGAGCATATGGAGTTAATCGCGCGGATGTCCAAGACTTTTTTACCTTGCTGGCTCAAATATATACCGAGAATGATCTAAGCACACATCCCGAGAAGATATTCAATATGGACGAAACGGGTATCCAAGTGAATAACAAACCTGGTAAAGTAATTGCAACAAAAGGTTCTAAGGACGTGTACACGCTGACAAGCAGTGAAAAAGGAGAAAATGTCACAGTTATAGCATGTTGCAACGCACAAGGGAATTTTCTTCCACCAGTTCTAATTTACAAAGGCACATATAGTAAACCTCAATTTTCGGAAGGTTTGCCGCCAGGTTCGCAAGTGTTTATGAATAAAAAATCATCCTACATAAACACTGATCTTTTTATGAAATGGTTTGAGGAGATTTTTTTGCCAGCAAAAGGTTCTGGAAAAGCATTGTTGATCATGGACGGGCATAGTTCTCACAGCAACAATATCAGATTATTGGAAGTGGCTAAAGACAATGATGTGACTTTATTATGCTTTCCCAGTCACACTACACATGCCATGCAACCTCTGGATAGAGCTTTTTTCAAACCATTTAAAGTTTATTTTGCACAAGAAGCCAAATCATGGATGATCATGAATAAAAACAAGAAGCTTACGAGGTACGATGTATCCAAACTTATTGGCAAAGCTTGGTGTAAAGCGGCAAGGGTATCAAACGGCGTCTCTGCTTTAAAATCTTGCGGCATATACCCTTACGACCCAAATGCTATACCTGACCATTTTTTCGCTTTATCTGATGCCTTGCATGAACAGGATTTGATTGCTAATGAACAACACGCAGGAACACCTTCAGACATGTTAGAAAATATTTCAGAGCAACAAAGTATGGACGCTATGGAAGTATCGTTGATAGATACTTTGGATGAGGATGCTATAGATATCATTAATCAACTTACTTCTGACGCAAACAAAGAAGAATCATAA
- Protein Sequence
- MPRNYVRSTLRAFWSETDLDEAMKKVRQKKMGVNEAARTYNIPSRTLRRHLLSGTLKVGLGRRPVFNQAEEKKLVAHIKQLEKVGFAPDRKDVKEMAYQLAQKLNIKNIFSDTSRKAGDVWFTGFLNRNPELSQRKSEGLSLARAYGVNRADVQDFFTLLAQIYTENDLSTHPEKIFNMDETGIQVNNKPGKVIATKGSKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMKWFEEIFLPAKGSGKALLIMDGHSSHSNNIRLLEVAKDNDVTLLCFPSHTTHAMQPLDRAFFKPFKVYFAQEAKSWMIMNKNKKLTRYDVSKLIGKAWCKAARVSNGVSALKSCGIYPYDPNAIPDHFFALSDALHEQDLIANEQHAGTPSDMLENISEQQSMDAMEVSLIDTLDEDAIDIINQLTSDANKEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695418; iTF_00826883; iTF_00826807;
- 90% Identity
- -
- 80% Identity
- -