Abis013004.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000061.1:988575-995641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.27 18 6.4 1.0 2 23 295 317 294 317 0.94 2 14 0.04 2.7 9.1 0.4 1 23 323 345 323 345 0.98 3 14 0.11 7.1 7.7 4.1 1 23 351 373 351 373 0.91 4 14 0.0018 0.12 13.3 0.1 3 21 381 399 380 400 0.93 5 14 1.3 84 4.3 0.1 2 23 431 453 430 453 0.93 6 14 10 6.7e+02 1.5 2.9 2 23 460 481 459 481 0.94 7 14 0.0023 0.16 12.9 1.7 1 23 487 509 487 509 0.96 8 14 0.016 1.1 10.3 0.0 2 20 516 534 515 535 0.94 9 14 0.0045 0.3 12.0 1.3 2 23 552 573 551 573 0.97 10 14 0.0019 0.13 13.2 0.7 1 23 580 602 580 602 0.98 11 14 4e-05 0.0027 18.5 1.1 3 23 609 629 608 629 0.98 12 14 4.3e-05 0.0029 18.4 1.1 1 23 635 657 635 657 0.97 13 14 1.6e-05 0.0011 19.7 0.6 1 23 663 685 663 685 0.94 14 14 2.1e-05 0.0014 19.4 2.6 1 23 691 714 691 714 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAAACCGTAGAATCCAATGAAGAACCTCCTAATTCGGCGCTAAACATGTCCATGAGCTATGATTACAGTGAACATATTCATTATAATTCACGTTACAATGAGAACCAATCCTCAACGCTTAGAGAACACTACGAATTACATCCAGAACCATCGATATCCACGTCCAAAACCATGGAAATGGGTGAACAAAGCGAAAAATCCGCTGAATATACAGAAACTGAAAATAAGCAACAGTCTAAAGAAAGTGAAGCAACAACGACTCACTGTCGGTTCTGCGCCACGAAAATGGACTGCCGGGATCTGCTAGACCTATCCACCGAAGACATCATTGGGAAGTACCAAAAACTGCTGTTATTCCTCAAATTAGACATAGACTTTTCAACGAGCAATCCGTTGCCTAAGTTCGCTTGTACATCTTGTCATAACATGTGTTTGGAGACTTATAGGTTCTTCTTGAAGGTAGGGAAAGCTCAGGAAGATCTTAATGCGTTGTATTCTAAAGATATTACCGTTCTGACGGATTTAGATGGGTCTAGTAATAAGGAAGATCCAATGGAGATTGATGTTATTCAGAATATGGTTATCGGGAAAGGAATTATAAAGGTGGAGCTGGAGGAGGAGGAGCCTCGAGCTGATGAAAGCGCTTCGGATACTGAACCACAATTCACAGATTTGGATAGTACCACAGCACCGACAACCGCAAGCAGTAATGAGACAGCGAAAACATTAAACCAAACAAACAACGAATCAGGACAATCCACAAACAAACCCAAGAAAACAAcgtacaaaattaaaaagacAATCGTGAAAACTCCAAAAAAGAAGACTGAAGCTGGTGTTAAGAACGTTACATTTTCCTGGGCGAGTTACTTATGGTCGTGTGATCATTGCAAGGCTGAGTTGAACACGATGGATGAGCTGAGGTTGCATAGCAGATATACGCATAATTGCTGTTACGGTTTCAGCTGCGTGGATTGCAATGATGAGTTCAATACGTTTAATGCTTTTGTTGAGCATGTGAGGACGCACAGAGAATAtttaagATTTTTCTGCCAATACTGCAACCGTAAGTTCCGCAACAAGGTGGAGTGTGTCCAGCACGCTCTCAGCCACTGGGACAACGGACAGAAGATATGTGAGCTGTGCGGGGAAGTGTTCCCGGACCACGAGACGCTGAGACAACACAAAAACTCCTACAGACCAAAACCGCTGTCTCACAACACGAGACGCAAGAAGCCCCGGCCGGTCGGAGACAAGCCGGTCTCGTGGAACGAGTACGTGTGGACTTGCCAGGATTGCTACCAGaTAATGCCAAACATCAACGATCTAAGGAGTCACGTCAGAGAGGTCCACTACAAGTGCTTCGCGATGAAGTGTGCAGACTGTCTGAGAGTCCACCGCAGTCACGGAGATCTCGTGAAACATGTGCACGGACACCGGCCCAACTTGAAACATTACTGTCCATACTGCAACCAGTACTTCGAACATCTGGAGGAATTGGACAACCACATAGAAGAACATTACTCCGGTCCACAAAAACCGTGCTACGGCTGCGGAGAGATATTCGAAAACGACGAGTTACTACGTAAACATATCTTCGATTATGAAGCGGTGAGGAAACCAGGCCCACACTCCGAGGAGGAAGTCACATGTGACATTTGCTCGAAGAACTGCGTTACCGTTGGAAAGTTGAAGATACACCGGAAAATACACGAATACAAAGAACGGTGTTACGTTTGTGACACATGTGGCAACTCGTACTTCAACTATTGGACGTACCAATCTCATATAAAGATTCACGGGGAACGTTCAGAGATATGTAAGATATGCAAAAAAGGTTTCCCGACTAAAGTGAAGTTGAAGAATCACGCGAAAACACATTTGATCGATCGTCCATTCGCTTGTGACCAGTGCGGCAACGCttttaagacaaaaaataagttAACGAGACACAAAATGATACATACAGATGCTAAGCCCTACGTTTGTGTGATATGTGACAAGAGTTTTAGACAAAAGAACGGTCTGAAGAACCATTCGGCTCAGCATACTGGTGTGAGACCGTATCAATGTGAATTTTGCGATCGGACGTTTACGAATAACCCGAATAGGGACAAACATATGAGGAGGAGGCATGGCATTCCGCTGTACAAAGCAAAGGAAGTTCAGCAAGAAATCATCGATACGAAGGCCAAGGAGTGGCTGAGTCAGGTGACCGCTAATCAGAAGAAAAGGAAGGATAATAGTGATGTGCAAATGCAGGCTTCGAATTCGGTGATAGTGTAA
- Protein Sequence
- MSETVESNEEPPNSALNMSMSYDYSEHIHYNSRYNENQSSTLREHYELHPEPSISTSKTMEMGEQSEKSAEYTETENKQQSKESEATTTHCRFCATKMDCRDLLDLSTEDIIGKYQKLLLFLKLDIDFSTSNPLPKFACTSCHNMCLETYRFFLKVGKAQEDLNALYSKDITVLTDLDGSSNKEDPMEIDVIQNMVIGKGIIKVELEEEEPRADESASDTEPQFTDLDSTTAPTTASSNETAKTLNQTNNESGQSTNKPKKTTYKIKKTIVKTPKKKTEAGVKNVTFSWASYLWSCDHCKAELNTMDELRLHSRYTHNCCYGFSCVDCNDEFNTFNAFVEHVRTHREYLRFFCQYCNRKFRNKVECVQHALSHWDNGQKICELCGEVFPDHETLRQHKNSYRPKPLSHNTRRKKPRPVGDKPVSWNEYVWTCQDCYQIMPNINDLRSHVREVHYKCFAMKCADCLRVHRSHGDLVKHVHGHRPNLKHYCPYCNQYFEHLEELDNHIEEHYSGPQKPCYGCGEIFENDELLRKHIFDYEAVRKPGPHSEEEVTCDICSKNCVTVGKLKIHRKIHEYKERCYVCDTCGNSYFNYWTYQSHIKIHGERSEICKICKKGFPTKVKLKNHAKTHLIDRPFACDQCGNAFKTKNKLTRHKMIHTDAKPYVCVICDKSFRQKNGLKNHSAQHTGVRPYQCEFCDRTFTNNPNRDKHMRRRHGIPLYKAKEVQQEIIDTKAKEWLSQVTANQKKRKDNSDVQMQASNSVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720662;
- 90% Identity
- -
- 80% Identity
- -