Abis019448.2
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000127.1:636153-642098[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-11 8.7e-09 35.4 0.0 4 39 172 208 169 212 0.89 2 4 7.1e-12 2.4e-09 37.1 0.4 2 39 224 261 223 264 0.93 3 4 3e-15 1e-12 48.0 0.0 2 45 279 323 278 323 0.96 4 4 1.2e-18 4.2e-16 58.8 0.0 1 45 330 375 330 375 0.96
Sequence Information
- Coding Sequence
- ATGCCTGCCAACGGAGCATCGCAAATAAAACGCGAACCGCTCTCGGATGAAGACGATAGTAACTCGTTCGTTCACGGGTACTTAGCTAATCAGCTACCCTCACTGGGACGATACGTCAAGCCGGAAAATGTGTGCAGACAAGATGGCGGACCACGAATGCTGCATATACAGCCTCAAGGCCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACCCCGGTCTGCGTGAAGCAAGAGCCGGCTGATGCTGTCCCGGCCACCACGCTGGAGACTCTGGAACCGGTACCACATGCCACGggcGCCACCCTCATCGACAGACACATGTCAATGCTGTGCTCAACCGAAGTGCCTGAGTCGTCGGACTTTATGCCGCTGATGGCTGTCAAAGACGAGCCTCTGTCGGAAGGAGagcaacaacactatagCGGAGAAGACACCAGTGATTCCTGTGGGACTCAACCTGAACCTGCACCTAGAACTAGTCCTAAAAGTTGGACACAGCAGGATATGGATAACGCGCTGGAAGCATTAAGAAAACACAACATGAGTCTTACCAAGGCATCATCAACGTACGGCATTCCGTCCACCACTCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGACGGCGCGTCCAAGTCGTGGAGCGAGGCCGACCTGCGTGCCGCGCTGCACGCGCTGCGAGCCGGTGCTATATCAGCCAACAAGGCTAGCAAGGCTTATGGTATCCCGAGCAGCACTCTGTACAAGATAGCTCGTCGTGAAGGCATCCGCCTCGCCGCGCCCTTCAACGCGGCCCCCACGGCGTGGCGGCGCGCGGACCTCGAGCGCGCGCTCGACGCCATCCGGCGCGGGGCCAGCTCGGTGCAGCGGGCCGCCTCGCAGTTTGGGATACCCACAGGAACGCTGTACGGGCGCTGCAAGCGCGAAGGCATCGAGTTGTCTCGCTCCAACCCCACTCCCTGGTCCGAAGACGCCATGGGAGAGGCTTTAGAAGCTGTCagGGTTGGTCAAATGTCTATAAACCAAGCGGCCATCCACTACAATCTGCCATATTCTTCGCTCTACGGGAGATTCAAGCGTTGCAAGTACCAGACGCAGaatctTCAACCAATGCAGCAAGTAGACATCCAAAAGCCAATGGAAATGGAGCAGGCGTGCCAACCTCACGACATGTACTACCACCAGGAGCAGTACCAACATGCCGACATGACGGAGATGCAAACCATTCCGAGTTTTCAGATGTTCGACTACCAGACGTACTATCAAAATGGAGTCGTCAGTTGA
- Protein Sequence
- MPANGASQIKREPLSDEDDSNSFVHGYLANQLPSLGRYVKPENVCRQDGGPRMLHIQPQGLEELAPLAPAGPAATPVCVKQEPADAVPATTLETLEPVPHATGATLIDRHMSMLCSTEVPESSDFMPLMAVKDEPLSEGEQQHYSGEDTSDSCGTQPEPAPRTSPKSWTQQDMDNALEALRKHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKDGASKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALDAIRRGASSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQNLQPMQQVDIQKPMEMEQACQPHDMYYHQEQYQHADMTEMQTIPSFQMFDYQTYYQNGVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -